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    • Java
      42003Updated Feb 14, 2025Feb 14, 2025
    • ReportStream is a public intermediary tool for delivery of data between different parts of the healthcare ecosystem.
      Kotlin
      Creative Commons Zero v1.0 Universal
      42751.3k152Updated Feb 14, 2025Feb 14, 2025
    • dibbs-vm

      Public
      HCL
      Creative Commons Zero v1.0 Universal
      40301Updated Feb 14, 2025Feb 14, 2025
    • dibbs-aws

      Public template
      HCL
      Creative Commons Zero v1.0 Universal
      2301Updated Feb 14, 2025Feb 14, 2025
    • The Public Health Data Operations (PHDO) Upload service provides secure ingestion, delivery, and observability of public health files from data senders to CDC program target locations via Application Programming Interfaces (APIs).
      Go
      Apache License 2.0
      594219Updated Feb 14, 2025Feb 14, 2025
    • A Python package for common pre- and post-processing operations done by CFA Predict for short term forecasting, nowcasting, and scenario modeling.
      Python
      Apache License 2.0
      26143Updated Feb 14, 2025Feb 14, 2025
    • HTML
      Creative Commons Zero v1.0 Universal
      122426Updated Feb 14, 2025Feb 14, 2025
    • Data Ingestion for Modernization of NEDSS Project by Enquizit
      Java
      Apache License 2.0
      4609Updated Feb 14, 2025Feb 14, 2025
    • Python
      Apache License 2.0
      31134Updated Feb 14, 2025Feb 14, 2025
    • seqsender

      Public
      Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
      Python
      Apache License 2.0
      143450Updated Feb 14, 2025Feb 14, 2025
    • CDC OpenViz is a library of React packages for data visualization.
      TypeScript
      Apache License 2.0
      253904Updated Feb 14, 2025Feb 14, 2025
    • This repository is created for NEDSS Helm charts.
      Smarty
      Apache License 2.0
      4209Updated Feb 14, 2025Feb 14, 2025
    • Enterprise Data Exchange (DEX) is a new cloud-native centralized data ingestion, validation, and observation service scoped for common data types (HL7, FHIR, CDA, XML, CSV) sent to the CDC. It helps public health stakeholders who send data to the CDC while reducing the maintenance efforts, complexity, and duplication of ingestion points to CDC.
      C#
      Apache License 2.0
      5111571Updated Feb 14, 2025Feb 14, 2025
    • aquascope

      Public
      Nextflow
      MIT License
      142030Updated Feb 14, 2025Feb 14, 2025
    • The RecordLinker is a service that links records from two datasets based on a set of common attributes. The service is designed to be used in a variety of public health contexts, such as linking patient records from different sources or linking records from different public health surveillance systems.
      Python
      Apache License 2.0
      23212Updated Feb 14, 2025Feb 14, 2025
    • Models and infrastructure for forecasting COVID-19 and Flu hospitalizations using wastewater data with PyRenew
      Python
      Apache License 2.0
      38624Updated Feb 14, 2025Feb 14, 2025
    • R
      Apache License 2.0
      610225Updated Feb 14, 2025Feb 14, 2025
    • HCL
      Apache License 2.0
      3011Updated Feb 14, 2025Feb 14, 2025
    • phoenix

      Public
      🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens
      Python
      Apache License 2.0
      2567151Updated Feb 14, 2025Feb 14, 2025
    • ixa

      Public
      Rust
      Apache License 2.0
      214315Updated Feb 14, 2025Feb 14, 2025
    • Data Near Real Time Reporting micro services for Modernized NBS System
      TSQL
      Apache License 2.0
      2002Updated Feb 14, 2025Feb 14, 2025
    • SimpleReport is a fast, free, and easy way for COVID-19 testing facilities to report results to public health departments.
      Java
      Creative Commons Zero v1.0 Universal
      616019312Updated Feb 14, 2025Feb 14, 2025
    • The Public Health Data Observability (PHDO) Processing Status API (PS API) was developed to provide visibility into the status and performance of file uploads. The PS API provides the ability to receive reports about the status of uploads, and to develop custom queries to ask detailed questions about the data being uploaded and processed.
      Kotlin
      Apache License 2.0
      2304Updated Feb 14, 2025Feb 14, 2025
    • nbbp

      Public
      Negative binomial branching process final size distributions & parameter inference
      R
      Apache License 2.0
      2083Updated Feb 14, 2025Feb 14, 2025
    • Rnssp Shiny Apps are custom-built applications with seamless integration to the Rnssp R package.
      R
      Apache License 2.0
      6940Updated Feb 14, 2025Feb 14, 2025
    • A FHIR client allowing public health agencies to query health care organizations directly or via a TEFCA QHIN
      TypeScript
      Creative Commons Zero v1.0 Universal
      45422Updated Feb 14, 2025Feb 14, 2025
    • GitHub Actions by CDC's CFA team
      Python
      5471Updated Feb 14, 2025Feb 14, 2025
    • eMKF

      Public
      SAS
      Apache License 2.0
      3200Updated Feb 13, 2025Feb 13, 2025
    • Code to flag ICD-10-CM codes related to opioid involvement, substance use disorder, and mental health issues in structured hospital data
      Python
      6600Updated Feb 13, 2025Feb 13, 2025
    • Python
      Apache License 2.0
      2023Updated Feb 13, 2025Feb 13, 2025