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15 Open 51 Closed
15 Open 51 Closed
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Issues list

[New Feature Request] - Allow AWS S3 path for the CREATE_SRA_SAMPLESHEET function Bug: System Specific Something isn't working, specific to certain systems Enhancement New feature or request
#184 opened Jan 27, 2025 by vitu1
@NoForkJustCommit
2
Add Reformatted MLST Output Columns for NCBI Submissions to PHoeNIx WDL Workflow - requested enhancement Enhancement New feature or request
#183 opened Jan 23, 2025 by frankambrosio3
@jvhagey
Add n50 Value Output Column to PHoeNIx WDL Workflow - requested enhancement Enhancement New feature or request
#182 opened Jan 23, 2025 by frankambrosio3
@jvhagey
Podman support - requested enhancement Enhancement New feature or request
#181 opened Jan 22, 2025 by jvhagey
@jvhagey
Documentation for reference databases documentation Improvements or additions to documentation
#180 opened Jan 20, 2025 by slsevilla
@jvhagey
2
Error After Updating Nextflow and Phoenix Versions Tech Support Request Tech Support Request
#179 opened Dec 13, 2024 by Ashita2619
@jvhagey
13
Additional output columns needed for Terra.bio Enhancement New feature or request
#178 opened Dec 11, 2024 by jvhagey
@jvhagey
3
Considering Bakta for genome annotation - requested enhancement
#177 opened Dec 2, 2024 by vascokarla
@jvhagey
1
Refactor failed summary handling Low Severity Bug: Universal Something isn't working, but not wrong or killing pipeline
#152 opened Apr 4, 2024 by slsevilla
@jvhagey
1
Move params checks upstream to main.nf
#151 opened Apr 1, 2024 by slsevilla
1
handle failed samples via filtering
#147 opened Mar 28, 2024 by slsevilla
1 task
1
[BUG] - Resume flag restarts pipeline at SPADES, even if pipeline has completed downstream steps Low Severity Bug: Universal Something isn't working, but not wrong or killing pipeline
#129 opened Jan 20, 2024 by slsevilla
2
Create message/output when downstream and QC analysis is not complete or is interrupted due to taxa not assigned (taxa is not bacterial) Enhancement New feature or request
#123 opened Oct 2, 2023 by MOREYCK
@jvhagey
1
pigz error in PHOENIX:PHOENIX_EXTERNAL:ASSET_CHECK process on GCP VM Bug: System Specific Something isn't working, specific to certain systems
#120 opened Aug 18, 2023 by kprus
@jvhagey
6
Singe-end analysis - requested enhancement Enhancement New feature or request
#87 opened Feb 20, 2023 by AroobAlhumaidy
1
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