Skip to content

Commit

Permalink
Update use of augur.utils.read_strains to augur.io.read_strains
Browse files Browse the repository at this point in the history
`augur.utils.read_strains` has been moved to `augur.io.read_strains`
and deprecated for over a year.

It will be completely removed soon
<nextstrain/augur#1747>
  • Loading branch information
joverlee521 committed Feb 7, 2025
1 parent 41fda55 commit e03b6f0
Show file tree
Hide file tree
Showing 2 changed files with 4 additions and 3 deletions.
4 changes: 2 additions & 2 deletions scripts/calculate_epiweek.py
Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
#!/usr/bin/env python3
import argparse
from augur.io import read_metadata
from augur.utils import read_strains, write_json
from augur.io import read_metadata, read_strains
from augur.utils import write_json
import epiweeks
import pandas as pd

Expand Down
3 changes: 2 additions & 1 deletion scripts/plot_antigenic_distances_between_strains.py
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,8 @@

import argparse

from augur.utils import read_colors, read_strains
from augur.io import read_strains
from augur.utils import read_colors
import json
import matplotlib as mpl
import matplotlib.pyplot as plt
Expand Down

0 comments on commit e03b6f0

Please sign in to comment.