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@nextstrain

Nextstrain

Real-time tracking of pathogen evolution

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  1. ncov ncov Public

    Nextstrain build for SARS-CoV-2

    Python 1.4k 403

  2. augur augur Public

    Pipeline components for real-time phylodynamic analysis

    Python 268 128

  3. auspice auspice Public

    Web app for visualizing pathogen evolution

    JavaScript 297 162

Repositories

Showing 10 of 94 repositories
  • ncov Public

    Nextstrain build for SARS-CoV-2

    nextstrain/ncov’s past year of commit activity
    Python 1,353 MIT 403 72 23 Updated Feb 7, 2025
  • seasonal-flu Public

    Scripts. config, and snakefiles for seasonal-flu nextstrain builds

    nextstrain/seasonal-flu’s past year of commit activity
    Python 46 27 23 0 Updated Feb 7, 2025
  • nipah Public
    nextstrain/nipah’s past year of commit activity
    Python 0 0 2 0 Updated Feb 7, 2025
  • augur Public

    Pipeline components for real-time phylodynamic analysis

    nextstrain/augur’s past year of commit activity
    Python 268 AGPL-3.0 128 221 (1 issue needs help) 36 Updated Feb 7, 2025
  • cli Public

    The Nextstrain command-line interface (CLI)—a program called nextstrain—which aims to provide a consistent way to run and visualize pathogen builds and access Nextstrain components like Augur and Auspice across computing environments such as Docker, Conda, and AWS Batch.

    nextstrain/cli’s past year of commit activity
    Python 27 MIT 20 62 3 Updated Feb 7, 2025
  • fauna Public

    RethinkDB database to support real-time virus analysis

    nextstrain/fauna’s past year of commit activity
    Python 33 AGPL-3.0 13 19 10 Updated Feb 6, 2025
  • mpox Public

    Nextstrain build for mpox virus

    nextstrain/mpox’s past year of commit activity
    Python 45 MIT 20 26 4 Updated Feb 6, 2025
  • nextclade_data Public

    Datasets for https://github.com/nextstrain/nextclade

    nextstrain/nextclade_data’s past year of commit activity
    Python 32 27 8 14 Updated Feb 6, 2025
  • ebola Public

    Nextstrain build for Ebola virus

    nextstrain/ebola’s past year of commit activity
    Python 3 9 4 3 Updated Feb 6, 2025
  • nextstrain.org Public

    The Nextstrain website

    nextstrain/nextstrain.org’s past year of commit activity
    JavaScript 93 AGPL-3.0 49 68 8 Updated Feb 6, 2025
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