Include original GISAID strain name in metadata

Adds the GISAID strain name to list of fields to fetch from fauna in and parse from the raw sequences FASTA in the "upload" workflow. This change will include these original names in the metadata in S3.
nextstrain · Oct 24, 2024 · a918d52 · a918d52
1 parent c5ae153
commit a918d52
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/profiles/upload.yaml b/profiles/upload.yaml
@@ -21,6 +21,7 @@ fauna_fasta_fields:
   - submitting_lab
   - age
   - gender
+  - gisaid_strain
 fasta_fields:
   - strain
   - virus
@@ -38,6 +39,7 @@ fasta_fields:
   - submitting_lab
   - age
   - gender
+  - gisaid_strain
 prettify_fields:
   - region
   - country