Update H3N2 outliers

nextstrain · Dec 11, 2024 · a83f8b4 · a83f8b4
1 parent 76a2ddd
commit a83f8b4
Showing 1 changed file with 68 additions and 67 deletions.
diff --git a/config/h3n2/outliers.txt b/config/h3n2/outliers.txt
@@ -34,6 +34,8 @@ A/Catalonia/NSVH100751838/2018
 A/ChiangRai/D1249/2022
 A/ChiangRai/NIC-P3252/2022
 A/Chile/8266/2003
+A/Corsica/3/2009
+A/Corsica/7/2007
 A/Corsica/10/2009
 A/Corsica/11/2008
 A/Corsica/11/2009
@@ -45,11 +47,9 @@ A/Corsica/24/2009
 A/Corsica/25/2009
 A/Corsica/27/2009
 A/Corsica/28/2009
-A/Corsica/3/2009
 A/Corsica/38/2009
 A/Corsica/39/2009
 A/Corsica/42/2009
-A/Corsica/7/2007
 A/Cyprus/F83/2017
 A/Dakar/922/2022
 A/Darwin/143/2020
@@ -66,9 +66,9 @@ A/Guangdong-Duanzhou/1227/2017
 A/Guangdong-Maonan/1173/2017
 A/Guangxi-Gangbei/190/2019
 A/Guatemala/116/2018
+A/Hawaii/3/2012
 A/Hawaii/28/2020
 A/Hawaii/28/2020-egg
-A/Hawaii/3/2012
 A/Heilongjiang-Jiguan/1222/2020
 A/Helsinki/798/2013
 A/Helsinki/823/2013
@@ -78,20 +78,6 @@ A/Helsinki/942/2013
 A/HoChiMinh/4596/2010
 A/HongKong/H090-781-V10/2009
 A/HongKong/HK1/2008
-A/HongKong/HK10/2008
-A/HongKong/HK10MA21-1/2008
-A/HongKong/HK10MA21-2/2008
-A/HongKong/HK10MA21-3/2008
-A/HongKong/HK10MA21-4/2008
-A/HongKong/HK11/2008
-A/HongKong/HK11MA21-1/2008
-A/HongKong/HK11MA21-2/2008
-A/HongKong/HK11MA21-3/2008
-A/HongKong/HK11MA21-4/2008
-A/HongKong/HK12/2008
-A/HongKong/HK12MA21-1/2008
-A/HongKong/HK12MA21-2/2008
-A/HongKong/HK12MA21-3/2008
 A/HongKong/HK1MA21-1/2008
 A/HongKong/HK1MA21-2/2008
 A/HongKong/HK1MA21-3/2008
@@ -122,6 +108,20 @@ A/HongKong/HK9/2008
 A/HongKong/HK9MA21-1/2008
 A/HongKong/HK9MA21-2/2008
 A/HongKong/HK9MA21-3/2008
+A/HongKong/HK10/2008
+A/HongKong/HK10MA21-1/2008
+A/HongKong/HK10MA21-2/2008
+A/HongKong/HK10MA21-3/2008
+A/HongKong/HK10MA21-4/2008
+A/HongKong/HK11/2008
+A/HongKong/HK11MA21-1/2008
+A/HongKong/HK11MA21-2/2008
+A/HongKong/HK11MA21-3/2008
+A/HongKong/HK11MA21-4/2008
+A/HongKong/HK12/2008
+A/HongKong/HK12MA21-1/2008
+A/HongKong/HK12MA21-2/2008
+A/HongKong/HK12MA21-3/2008
 A/HongKong/HKMA12/2008
 A/HongKong/HKMA12A/2008
 A/HongKong/HKMA12B/2008
@@ -134,17 +134,17 @@ A/HongKong/HKMA20D/2008
 A/HongKong/HKMA20E/2008
 A/HuNan/01/2014
 A/HuNan/1/2014
-A/Illinois/11/2012
-A/Illinois/14/2012
 A/Illinois/3/2013
 A/Illinois/9/2012
+A/Illinois/11/2012
+A/Illinois/14/2012
+A/India/3/2019
+A/India/244/2021
 A/India/1132/2021
 A/India/1718/2021
 A/India/1759/2021
 A/India/2063/2021
 A/India/2100/2021
-A/India/244/2021
-A/India/3/2019
 A/India/3256/2021
 A/India/3835/2021
 A/India/6352/2012
@@ -156,37 +156,29 @@ A/India/Pun-NIV326980/2021
 A/India/Pun-NIV327049/2021
 A/India/Pun-NIV328238/2021
 A/India/Pune-NIVSARI5334/2021
+A/Indiana/4/2013
+A/Indiana/5/2013
+A/Indiana/5/2013-egg
 A/Indiana/06/2013
+A/Indiana/6/2013
+A/Indiana/7/2012
+A/Indiana/7/2013
+A/Indiana/8/2011
 A/Indiana/08/2012
+A/Indiana/8/2012
+A/Indiana/8/2013
+A/Indiana/9/2012
+A/Indiana/9/2013
 A/Indiana/10/2011
 A/Indiana/10/2011-egg
 A/Indiana/10/2013
-A/Indiana/103/2012
 A/Indiana/11/2013
-A/Indiana/113/2012
-A/Indiana/114/2012
-A/Indiana/115/2012
 A/Indiana/12/2012
-A/Indiana/123/2012
-A/Indiana/125/2012
-A/Indiana/126/2012
-A/Indiana/127/2012
 A/Indiana/13/2012
 A/Indiana/13/2012-egg
-A/Indiana/132/2012
-A/Indiana/133/2012
-A/Indiana/135/2012
-A/Indiana/138/2012
 A/Indiana/14/2012
 A/Indiana/14/2013
-A/Indiana/144/2012
-A/Indiana/145/2012
-A/Indiana/147/2012
-A/Indiana/149/2012
 A/Indiana/15/2012
-A/Indiana/150/2012
-A/Indiana/152/2012
-A/Indiana/153/2012
 A/Indiana/16/2012
 A/Indiana/17/2012
 A/Indiana/17/2013
@@ -200,53 +192,61 @@ A/Indiana/21/2013
 A/Indiana/27/2018
 A/Indiana/31/2012
 A/Indiana/38/2012
-A/Indiana/4/2013
 A/Indiana/43/2012
 A/Indiana/46/2012
 A/Indiana/49/2012
-A/Indiana/5/2013
-A/Indiana/5/2013-egg
 A/Indiana/52/2012
 A/Indiana/52/2012-egg
 A/Indiana/57/2012
 A/Indiana/59/2012
-A/Indiana/6/2013
 A/Indiana/60/2012
 A/Indiana/65/2012
-A/Indiana/7/2012
-A/Indiana/7/2013
 A/Indiana/77/2012
-A/Indiana/8/2011
-A/Indiana/8/2012
-A/Indiana/8/2013
-A/Indiana/9/2012
-A/Indiana/9/2013
 A/Indiana/90/2012
 A/Indiana/93/2012
 A/Indiana/99/2012
-A/Iowa/16/2009
-A/Iowa/16/2012
-A/Iowa/38/2017
+A/Indiana/103/2012
+A/Indiana/113/2012
+A/Indiana/114/2012
+A/Indiana/115/2012
+A/Indiana/123/2012
+A/Indiana/125/2012
+A/Indiana/126/2012
+A/Indiana/127/2012
+A/Indiana/132/2012
+A/Indiana/133/2012
+A/Indiana/135/2012
+A/Indiana/138/2012
+A/Indiana/144/2012
+A/Indiana/145/2012
+A/Indiana/147/2012
+A/Indiana/149/2012
+A/Indiana/150/2012
+A/Indiana/152/2012
+A/Indiana/153/2012
 A/Iowa/4/2013
 A/Iowa/7/2011
 A/Iowa/7/2011-egg
 A/Iowa/8/2011
 A/Iowa/8/2011-egg
 A/Iowa/9/2011
+A/Iowa/16/2009
+A/Iowa/16/2012
+A/Iowa/38/2017
+A/Iran/60/Azar17B/2021
 A/Iran/140/2014
 A/Iran/227/2014
 A/Iran/234/2014
 A/Iran/407/2014
-A/Iran/60/Azar17B/2021
 A/Ireland/52590/2017
 A/Ireland/53051/2017
 A/Ireland/61097/2017
 A/Ireland/61451/2017
 A/Ireland/62518/2017
+A/Jiangsu-Chongchuan/1830/2014
 A/Jiangsu-Chongchuan/12179/2014
 A/Jiangsu-Chongchuan/12714/2015
 A/Jiangsu-Chongchuan/12908/2015
-A/Jiangsu-Chongchuan/1830/2014
 A/Jiangsu-Tianning/1707/2013
 A/Kansas/13/2009
 A/Kentucky/11/2012
@@ -348,15 +348,17 @@ A/Myanmar/18M090/2018
 A/Nanjing/1/2010
 A/Nebraska/1/2021
 A/Neimenggu-Keerqin/1194/2020
-A/Nepal/142/2011
 A/Nepal/21FL2237/2021
+A/Nepal/142/2011
 A/Nepal/S1825/2023
 A/Netherlands/233/1982
 A/NewJersey/53/2015
 A/NewMexico/19/2022
 A/NorthDakota/19/2017
 A/Novosibirsk/1/2019
-A/OSAKA/31/2005
+A/Ohio/2/2014
+A/Ohio/5/2013
+A/Ohio/6/2021
 A/Ohio/13/2012
 A/Ohio/13/2012-egg
 A/Ohio/13/2017
@@ -372,7 +374,6 @@ A/Ohio/18/2012-egg
 A/Ohio/18/2017
 A/Ohio/19/2012
 A/Ohio/19/2017
-A/Ohio/2/2014
 A/Ohio/20/2012
 A/Ohio/20/2012-egg
 A/Ohio/20/2017
@@ -400,15 +401,12 @@ A/Ohio/37/2012
 A/Ohio/38/2012
 A/Ohio/41/2012
 A/Ohio/43/2012
-A/Ohio/4319/2014
 A/Ohio/44/2012
 A/Ohio/45/2012
 A/Ohio/47/2012
-A/Ohio/5/2013
 A/Ohio/52/2012
 A/Ohio/56/2012
 A/Ohio/57/2012
-A/Ohio/6/2021
 A/Ohio/62/2012
 A/Ohio/63/2012
 A/Ohio/64/2012
@@ -429,24 +427,26 @@ A/Ohio/87/2012
 A/Ohio/88/2012
 A/Ohio/90/2012
 A/Ohio/91/2012
+A/Ohio/4319/2014
 A/Okahoma/5909/2017
 A/Ontario/1252/2007
 A/Ontario/RV1273/2005
 A/Ontario/RV3236/2016
 A/Oregon/28/2022
+A/OSAKA/31/2005
 A/Pakistan/GIHSN-ICT-610/2023
 A/Para/181916-IEC/2021
 A/Paris/89/2015
 A/Parma/3/2021
 A/Parma/4/2021
 A/Pennsylvania/09/2011
+A/Pennsylvania/9/2011
 A/Pennsylvania/11/2011
 A/Pennsylvania/11/2012
 A/Pennsylvania/13/2012
 A/Pennsylvania/14/2010
 A/Pennsylvania/17/2012
 A/Pennsylvania/40/2010
-A/Pennsylvania/9/2011
 A/Peru/6212/2019
 A/Peru/UPCH_3874/2023
 A/Philippines/6/2021
@@ -460,12 +460,13 @@ A/Rennes/F_006_101_LG/2020
 A/Rennes/F_006_107_CA/2020
 A/Rennes/F_006_116_PN/2020
 A/Rennes/F_006_118_JF/2020
+A/SantaHelena/Parana_51528/2021
 A/Santiago/6764/2006
 A/SaoPaulo/3-34891/2014
 A/SaoPaulo/36178/2015
-A/SaoPaulo/554097/2017
 A/SaoPaulo/61282/2015
 A/SaoPaulo/65194/2015
+A/SaoPaulo/554097/2017
 A/SaoPaulo/IAL/C8809/2022
 A/Sari/388/2006
 A/Sedbury/2991/2023
@@ -478,8 +479,8 @@ A/SouthAustralia/22/2018
 A/SouthAustralia/47/2016
 A/SouthAustralia/85/2018
 A/SouthCarolina/NHRC0001/2011
-A/SriLanka/217/2023
 A/SriLanka/35/2018
+A/SriLanka/217/2023
 A/StPetersburg/5/2009
 A/StPetersburg/5/2009-egg
 A/StPetersburg/RII-2415S/2021
@@ -488,14 +489,14 @@ A/Taiwan/937/2009
 A/Tasmania/308/2022
 A/Tokyo/1/1975
 A/Utah/10/2012
+A/WestVirginia/6/2011
+A/WestVirginia/9/2012
 A/WestVirginia/10/2012
 A/WestVirginia/15/2012
 A/WestVirginia/16/2012
 A/WestVirginia/24/2022
 A/WestVirginia/25/2022
 A/WestVirginia/26/2022
-A/WestVirginia/6/2011
-A/WestVirginia/9/2012
 A/Wisconsin/1/2021
 A/Wisconsin/12/2010
 A/Wisconsin/22/2012