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Pull requests: galaxyproject/tools-iuc

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309 Open 5,172 Closed
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Pull requests list

Add log file output to Porechop
#6726 opened Feb 6, 2025 by RZ9082 • Draft
1 of 5 tasks
2
Add seqkit head tool
#6724 opened Feb 6, 2025 by SaimMomin12 Loading…
3 of 5 tasks
2
Update Biobox_add_taxid to 1.2
#6721 opened Feb 4, 2025 by SantaMcCloud Loading…
3 of 5 tasks
6
Cnvkit: update to 3.12 (Original plan to downgrade it to 3.10, but this affected the tools function)
#6720 opened Feb 4, 2025 by khaled196 Loading…
1 of 5 tasks
Updating tools/nanoplot
#6719 opened Feb 4, 2025 by SaimMomin12 Loading…
3 of 5 tasks
Updating fastp test-data
#6718 opened Feb 4, 2025 by SaimMomin12 Loading…
3 of 5 tasks
3
Update Binette
#6716 opened Feb 3, 2025 by SantaMcCloud Loading…
3 of 5 tasks
7
update ggplot scatterplot tool
#6715 opened Feb 3, 2025 by hechth Loading…
3 tasks done
1
5
updated volcanoplot to use column names
#6714 opened Feb 3, 2025 by hechth Loading…
3 tasks done
1
1
Updating tools/picrust2 from version 2.5.3 to 2.6.0
#6712 opened Feb 3, 2025 by gxydevbot Loading…
Updating tools/nanoplot from version 1.43.0 to 1.44.1
#6711 opened Feb 3, 2025 by gxydevbot Loading…
Updating tools/sra-tools from version 3.1.1 to 3.2.0
#6704 opened Jan 27, 2025 by gxydevbot Loading…
1
Update artic to v.1.6.0
#6693 opened Jan 24, 2025 by ammaraziz Loading…
3 of 5 tasks
32
[WIP] EMBOSS v6
#6687 opened Jan 22, 2025 by shiltemann Loading…
4 of 5 tasks
Add drug2cell tool
#6684 opened Jan 21, 2025 by Mennayousef Loading…
35
Updating tools/homer from version 4.11 to 5.1
#6682 opened Jan 20, 2025 by gxydevbot Loading…
Update pharokka DM
#6680 opened Jan 16, 2025 by paulzierep Loading…
3 of 5 tasks
1
Updating tools/stringtie from version 2.2.3 to 3.0.0
#6673 opened Jan 13, 2025 by gxydevbot Loading…
hicBuildMatrix SAM inputs changed from repeat to plain params
#6670 opened Jan 10, 2025 by pavanvidem Loading…
3 of 5 tasks
12
Add data manager for clair3 models
#6659 opened Jan 7, 2025 by pvanheus Loading…
2 of 5 tasks
9
Updating tools/lineagespot from version 1.6.0 to 1.10.0
#6657 opened Jan 6, 2025 by gxydevbot Loading…
Updating tools/dexseq from version 1.48.0 to 1.52.0
#6653 opened Dec 30, 2024 by gxydevbot Loading…
1
Updating tools/annotatemyids from version 3.18.0 to 3.20.0
#6652 opened Dec 30, 2024 by gxydevbot Loading…
update pharokka to latest version
#6651 opened Dec 28, 2024 by bgruening Loading…
3 of 5 tasks
9
Updating tools/lastz from version 1.04.22 to 1.04.41
#6649 opened Dec 23, 2024 by gxydevbot Loading…
7
ProTip! Exclude everything labeled bug with -label:bug.