Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads

Discover differential transcript usage from polyA-captured single cell RNA-seq data

Single cell Nanopore sequencing data for Genotype and Phenotype

A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.

Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:

interactive visualization of single-cell transcriptomes

Isoform function prediction and interpretation

👨🏻‍👩🏻‍👧🏻‍👦🏻Heritability + genetic correlation analyses for 🧠human brain isoform expression

A Snakemake pipeline developed to quantify isoforms expression levels in large RNA-seq datasets and find poly-A sites

Pipeline for the selection of canonical proteins for reference proteomes

A python module to read and plot Galaxy RNA-seq data

Method to identify temporal and sex-specific alternative splicing from multi-omic data, specifically RNA-seq + (CUT&RUN or ChIP-seq).

EXIS is an interactive R shiny application for isoform-specific expression analysis.

Automated Isoform Discovery Detector (AIDD)

A Snakemake pipeline developed to quantify isoforms expression levels in large RNA-seq datasets and find poly-A sites

Collection of Script to extract isoform estimation from MISO pipeline

Perform molecular dynamics experiments (MD) with NAMD on colab

A package dedicated to the simulation of sequencing read data corresponding to randomly generated genes with predifined splice-models for the evaluation of transcriptome assembly tools

Get the latest gene-transcript identifiers using Ensembl, RefSeq, MANE and LRGs models.