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Issues list

Beyond the Hype: The Complexity of Automated Cell Type Annotations with GPT-4
#87 opened Feb 18, 2025 by szalata
@Paulos2411
scGPT-spatial: Continual Pretraining of Single-Cell Foundation Model for Spatial Transcriptomics more-info-needed bare bones added, requested more information from authors
#83 opened Feb 9, 2025 by szalata
@Paulos2411
1
Benchmarking AI Models for In Silico Gene Perturbation of Cells question Further information is requested
#73 opened Jan 13, 2025 by szalata
2
A Systematic Comparison of Single-Cell Perturbation Response Prediction Models question Further information is requested
#72 opened Jan 13, 2025 by szalata
2
Toward a privacy-preserving predictive foundation model of single-cell transcriptomics with federated learning and tabular modeling more-info-needed bare bones added, requested more information from authors
#71 opened Jan 13, 2025 by szalata
1
SCREADER: Prompting Large Language Models to Interpret scRNA-seq Data question Further information is requested
#70 opened Jan 6, 2025 by szalata
2
A joint analysis of single cell transcriptomics and proteomics using transformer more-info-needed bare bones added, requested more information from authors
#69 opened Jan 6, 2025 by szalata
1
Efficient Fine-Tuning of Single-Cell Foundation Models enables Zero-Shot Molecular Perturbation Prediction more-info-needed bare bones added, requested more information from authors
#68 opened Dec 21, 2024 by szalata
1
Evaluating the role of pre-training dataset size and diversity on single-cell foundation model performance more-info-needed bare bones added, requested more information from authors
#67 opened Dec 20, 2024 by szalata
1
Scmpt: Towards Applying Large Language Models To Complement Single-cell Foundation Models more-info-needed bare bones added, requested more information from authors
#59 opened Dec 17, 2024 by szalata
1
GenoHoption: Bridging Gene Network Graphs and Single-Cell Foundation Models more-info-needed bare bones added, requested more information from authors
#58 opened Dec 17, 2024 by szalata
1
A Transformer-Based Approach to Survival Outcome Prediction more-info-needed bare bones added, requested more information from authors
#57 opened Dec 17, 2024 by szalata
1
Mouse-Geneformer: A Deep Learning Model for Mouse Single-Cell Transcriptome and Its Cross-Species Utility more-info-needed bare bones added, requested more information from authors
#56 opened Dec 17, 2024 by szalata
1
Deeper evaluation of a single-cell foundation model more-info-needed bare bones added, requested more information from authors
#55 opened Dec 17, 2024 by szalata
1
Does Your Model Understand Genes? A Benchmark Of Gene Properties For Biological And Text Models more-info-needed bare bones added, requested more information from authors
#52 opened Dec 8, 2024 by szalata
1
Scaling Dense Representations for Single Cell with Transcriptome-Scale Context more-info-needed bare bones added, requested more information from authors
#51 opened Dec 6, 2024 by szalata
1
Tackling the Complexity of Spatial Transcriptomics Data Interpretation with Large Language Models more-info-needed bare bones added, requested more information from authors
#50 opened Dec 5, 2024 by szalata
1
Integrating Prior Knowledge Using Transformer for Gene Regulatory Network Inference more-info-needed bare bones added, requested more information from authors
#48 opened Dec 1, 2024 by szalata
1
BioLLM: A Standardized Framework for Integrating and Benchmarking Single-Cell Foundation Models more-info-needed bare bones added, requested more information from authors
#46 opened Nov 25, 2024 by szalata
@Paulos2411
2
CellPatch: a Highly Efficient Foundation Model for Single-Cell Transcriptomics with Heuristic Patching more-info-needed bare bones added, requested more information from authors
#45 opened Nov 21, 2024 by szalata
1
A framework for gene representation on spatial transcriptomics more-info-needed bare bones added, requested more information from authors
#42 opened Nov 19, 2024 by szalata
1
White-box Diffusion Transformer For Single-cell Rna-seq Generation more-info-needed bare bones added, requested more information from authors
#41 opened Nov 18, 2024 by szalata
1
scLong: A Billion-Parameter Foundation Model for Capturing Long-Range Gene Context in Single-Cell Transcriptomics more-info-needed bare bones added, requested more information from authors
#40 opened Nov 12, 2024 by szalata
1
scSwinTNet: A Cell Type Annotation Method for Large-Scale Single-Cell RNA-Seq Data Based on Shifted Window Attention more-info-needed bare bones added, requested more information from authors
#36 opened Oct 29, 2024 by szalata
1
Enhancing Generative Perturbation Models With Llm-informed Gene Embeddings more-info-needed bare bones added, requested more information from authors
#35 opened Oct 29, 2024 by szalata
1
ProTip! What’s not been updated in a month: updated:<2025-01-22.