test igraph behavior

R/igraph.R

@@ -66,18 +66,29 @@ drake_adjacent_vertices <- function(graph, v, mode) {
   index <- adjacent_vertices(graph = graph, v = v, mode = mode)
   index <- unlist(index, use.names = FALSE)
   index <- unique(index)
-  if (is.null(igraph_version_offset$offset)) {
-    igraph_version_offset$offset <- as.integer(
-      utils::compareVersion(
-        a = as.character(packageVersion("igraph")),
-        b = "2.1.2"
-      ) < 0L
-    )
+  igraph::V(graph)$name[index + get_igraph_offset()]
+}
+
+get_igraph_offset <- function() {
+  if (!is.null(igraph_offset$offset)) {
+    return(igraph_offset$offset)
   }
-  igraph::V(graph)$name[index + igraph_version_offset$offset]
+  opt <- igraph::igraph_opt("return.vs.es")
+  on.exit(igraph::igraph_options(return.vs.es = opt))
+  igraph::igraph_options(return.vs.es = FALSE)
+  test_graph <- igraph::make_graph(edges = c("a", "b"))
+  adjacent <- igraph::adjacent_vertices(
+    graph = test_graph,
+    v = "a",
+    mode = "out"
+  )
+  adjacent <- as.integer(adjacent)
+  offset <- 2L - adjacent
+  igraph_offset$offset <- offset
+  offset
 }
 
-igraph_version_offset <- new.env(parent = emptyenv())
+igraph_offset <- new.env(parent = emptyenv())
 
 subset_graph <- function(graph, subset) {
   if (!length(subset)) {

README.Rmd

@@ -73,9 +73,6 @@ Development
 <td align="left">
 <a href="https://github.com/ropensci/software-review/issues/156"><img src="https://badges.ropensci.org/156_status.svg" alt="rOpenSci"></a>
 </td>
-<td align="left">
-<a href="https://codecov.io/github/ropensci/drake?branch=main"><img src="https://codecov.io/github/ropensci/drake/coverage.svg?branch=main" alt="Codecov"></a>
-</td>
 </tr>
 <tr class="even">
 <td align="left">
@@ -361,7 +358,7 @@ make(plan, parallelism = "clustermq", jobs = 4)
 - [`drake-gitlab-docker-example`](https://gitlab.com/ecohealthalliance/drake-gitlab-docker-example): A small pedagogical example workflow that leverages `drake`, Docker, GitLab, and continuous integration in a reproducible analysis pipeline. Created by [Noam Ross](https://www.noamross.net/).
 - [`pleurosoriopsis`](https://github.com/joelnitta/pleurosoriopsis): The workflow that supports [Ebihara *et al.* 2019. "Growth Dynamics of the Independent Gametophytes of *Pleurorosiopsis makinoi* (Polypodiaceae)" *Bulletin of the National Science Museum Series B (Botany)* 45:77-86.](https://www.kahaku.go.jp/research/publication/botany.html). Created by [Joel Nitta](https://github.com/joelnitta).
 
-Alternatively, it is possible to run `drake` outside Docker and use the [`future`](https://github.com/HenrikBengtsson/future) package to send targets to a Docker image. `drake`'s [`Docker-psock`](https://github.com/wlandau/drake-examples/tree/main/Docker-psock) example demonstrates how. Download the code with `drake_example("Docker-psock")`.
+Alternatively, it is possible to run `drake` outside Docker and use the [`future`](https://github.com/futureverse/future) package to send targets to a Docker image. `drake`'s [`Docker-psock`](https://github.com/wlandau/drake-examples/tree/main/Docker-psock) example demonstrates how. Download the code with `drake_example("Docker-psock")`.
 
 # Installation
 
@@ -534,7 +531,7 @@ Many thanks to [Julia Lowndes](https://github.com/jules32), [Ben Marwick](https:
 - [Eric Nantz](https://github.com/rpodcast)
 - [Henrik Bengtsson](https://github.com/HenrikBengtsson)
 - [Ian Watson](https://github.com/IanAWatson)
-- [Jasper Clarkberg](https://github.com/dapperjapper)
+- Jasper Clarkberg
 - [Kendon Bell](https://github.com/kendonB)
 - [Kirill M&uuml;ller](https://github.com/krlmlr)
 - [Michael Schubert](https://github.com/mschubert)

README.md

@@ -48,9 +48,6 @@ Development
 <td align="left">
 <a href="https://github.com/ropensci/software-review/issues/156"><img src="https://badges.ropensci.org/156_status.svg" alt="rOpenSci"></a>
 </td>
-<td align="left">
-<a href="https://codecov.io/github/ropensci/drake?branch=main"><img src="https://codecov.io/github/ropensci/drake/coverage.svg?branch=main" alt="Codecov"></a>
-</td>
 </tr>
 <tr class="even">
 <td align="left">
@@ -492,7 +489,7 @@ examples that run `drake` inside a Docker image.
     Created by [Joel Nitta](https://github.com/joelnitta).
 
 Alternatively, it is possible to run `drake` outside Docker and use the
-[`future`](https://github.com/HenrikBengtsson/future) package to send
+[`future`](https://github.com/futureverse/future) package to send
 targets to a Docker image. `drake`’s
 [`Docker-psock`](https://github.com/wlandau/drake-examples/tree/main/Docker-psock)
 example demonstrates how. Download the code with
@@ -864,7 +861,7 @@ early in development.
   - [Eric Nantz](https://github.com/rpodcast)
   - [Henrik Bengtsson](https://github.com/HenrikBengtsson)
   - [Ian Watson](https://github.com/IanAWatson)
-  - [Jasper Clarkberg](https://github.com/dapperjapper)
+  - Jasper Clarkberg
   - [Kendon Bell](https://github.com/kendonB)
   - [Kirill Müller](https://github.com/krlmlr)
   - [Michael Schubert](https://github.com/mschubert)