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@qiime2

QIIME 2

Welcome to the QIIME 2 GitHub Organization! 👋

If you're a QIIME 2 user or developer, or are thinking about becoming one, refer to our Support Guidelines for details on how to learn or get help with QIIME 2.

If you're interested in contributing to repositories in the qiime2 GitHub organization, please start by reading our Contributing Guidelines.

This organization is primarily managed by the Caporaso Lab at Northern Arizona University, but has contributors from all over the world. If you have questions that aren't covered in the resources above, the best way to reach us is on the QIIME 2 Forum - it's where we hang out.

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  1. qiime2 qiime2 Public

    Official repository for the QIIME 2 framework.

    Python 490 240

  2. distributions distributions Public

    Makefile 1 5

  3. q2cli q2cli Public

    Command line interface for QIIME 2

    Python 19 24

  4. docs docs Public

    Python 21 58

Repositories

Showing 10 of 75 repositories
  • q2-deblur Public
    qiime2/q2-deblur’s past year of commit activity
    Python 2 BSD-3-Clause 22 7 1 Updated Feb 7, 2025
  • q2-vsearch Public

    vsearch plugin for QIIME 2

    qiime2/q2-vsearch’s past year of commit activity
    Python 6 BSD-3-Clause 22 9 2 Updated Feb 7, 2025
  • q2-quality-control Public

    A QIIME 2 plugin for quality control of sequence and feature data

    qiime2/q2-quality-control’s past year of commit activity
    Python 4 BSD-3-Clause 17 8 0 Updated Feb 7, 2025
  • distributions Public
    qiime2/distributions’s past year of commit activity
    Makefile 1 BSD-3-Clause 5 5 1 Updated Feb 7, 2025
  • library Public

    A website for sharing QIIME 2 Plugins

    qiime2/library’s past year of commit activity
    Svelte 0 BSD-3-Clause 1 2 0 Updated Feb 7, 2025
  • qiime2 Public

    Official repository for the QIIME 2 framework.

    qiime2/qiime2’s past year of commit activity
    Python 490 BSD-3-Clause 240 62 (5 issues need help) 6 Updated Feb 7, 2025
  • q2-feature-classifier Public

    QIIME 2 plugin supporting taxonomic classification

    qiime2/q2-feature-classifier’s past year of commit activity
    Python 18 BSD-3-Clause 38 8 (2 issues need help) 2 Updated Feb 6, 2025
  • q2doc Public

    A MyST executable plugin for documenting QIIME 2 plugins.

    qiime2/q2doc’s past year of commit activity
    Python 0 0 1 0 Updated Feb 6, 2025
  • q2-dada2 Public

    QIIME 2 plugin wrapping DADA2

    qiime2/q2-dada2’s past year of commit activity
    Python 20 BSD-3-Clause 37 11 3 Updated Feb 6, 2025
  • q2-cutadapt Public
    qiime2/q2-cutadapt’s past year of commit activity
    Python 3 BSD-3-Clause 18 3 1 Updated Feb 6, 2025

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