lint: various bugs found by deepcode #1073

	name: Spinorama

	on:
	push:
	branches: [ develop ]
	pull_request:
	branches: [ develop ]

	jobs:
	build:

	runs-on: ubuntu-latest

	steps:
	- uses: actions/checkout@v2
	- name: Set up Python 3.10.6
	uses: actions/setup-python@v3
	with:
	python-version: "3.10.6"
	- run: which python
	- run: pwd
	- run: ls -la
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	sudo apt-get install -y build-essential
	pip install -r requirements.txt
	pip install -r requirements-test.txt
	- name: Lint with flake8
	run: \|
	pip install flake8
	flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics --exclude spinorama-venv
	- name: Test metadata file
	run: \|
	PYTHONPATH=src ./check_meta.py
	- name: Compilation of cython files
	run: \|
	PYTHONPATH=src cd src/spinorama && python setup.py build_ext --inplace && ln -s c_compute_scores.cpython-*.so c_compute_scores.so
	- name: Test with pytest
	run: \|
	pip install pytest
	PYTHONPATH=src pytest

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