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adapt score computations to be closer to other reviewers #1068

adapt score computations to be closer to other reviewers

adapt score computations to be closer to other reviewers #1068

Workflow file for this run

name: Spinorama
on:
push:
branches: [ develop ]
pull_request:
branches: [ develop ]
jobs:
build:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- name: Set up Python 3.10.6
uses: actions/setup-python@v3
with:
python-version: "3.10.6"
- run: which python
- run: pwd
- run: ls -la
- name: Install dependencies
run: |
python -m pip install --upgrade pip
sudo apt-get install -y build-essential
pip install -r requirements.txt
pip install -r requirements-test.txt
- name: Lint with flake8
run: |
pip install flake8
flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics --exclude spinorama-venv
- name: Test metadata file
run: |
PYTHONPATH=src ./check_meta.py
- name: Compilation of cython files
run: |
PYTHONPATH=src cd src/spinorama && python setup.py build_ext --inplace && ln -s c_compute_scores.cpython-*.so c_compute_scores.so
- name: Test with pytest
run: |
pip install pytest
PYTHONPATH=src pytest