adapt score computations to be closer to other reviewers #1068
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name: Spinorama | |
on: | |
push: | |
branches: [ develop ] | |
pull_request: | |
branches: [ develop ] | |
jobs: | |
build: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Set up Python 3.10.6 | |
uses: actions/setup-python@v3 | |
with: | |
python-version: "3.10.6" | |
- run: which python | |
- run: pwd | |
- run: ls -la | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
sudo apt-get install -y build-essential | |
pip install -r requirements.txt | |
pip install -r requirements-test.txt | |
- name: Lint with flake8 | |
run: | | |
pip install flake8 | |
flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics --exclude spinorama-venv | |
- name: Test metadata file | |
run: | | |
PYTHONPATH=src ./check_meta.py | |
- name: Compilation of cython files | |
run: | | |
PYTHONPATH=src cd src/spinorama && python setup.py build_ext --inplace && ln -s c_compute_scores.cpython-*.so c_compute_scores.so | |
- name: Test with pytest | |
run: | | |
pip install pytest | |
PYTHONPATH=src pytest |