Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add single nucleic acid molecule comprised of RNA, DNA, and custom nucleic acid #11

Draft
wants to merge 9 commits into
base: main
Choose a base branch
from

Conversation

j-wags
Copy link
Member

@j-wags j-wags commented Jan 23, 2025

Partially addresses #2

Changes made in this Pull Request:

  • Adds code to fetch and strip waters+salts from 7jjf

PR Checklist

  • Tests
  • Docs?
  • CHANGELOG updated?

@Yoshanuikabundi
Copy link
Collaborator

I've tested this on #13 and it fails because the first residue has its phosphate group replaced with a hydrogen named HO5'. I'm guessing this is a common terminus for nucleic acids and we should support it?

@Yoshanuikabundi
Copy link
Collaborator

OK I've got this to a point in #13 that it fails to load because it has alt locs, for example in residue 49. The specified behavior is that any alt loc is an error. We should either remove alt locs from this example, or specify a different behavior.

@j-wags j-wags marked this pull request as draft January 27, 2025 19:30
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants