remove local mirdeep

nf-core · Sep 27, 2024 · 289f9aa · 289f9aa
1 parent b5ce5ab
commit 289f9aa
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diff --git a/modules/local/mirdeep2_mapper.nf b/modules/local/mirdeep2_mapper.nf
diff --git a/modules/local/mirdeep2_run.nf b/modules/local/mirdeep2_run.nf
diff --git a/subworkflows/local/mirdeep2.nf b/subworkflows/local/mirdeep2.nf
diff --git a/workflows/smrnaseq.nf b/workflows/smrnaseq.nf
@@ -22,7 +22,6 @@ include { FASTQ_FIND_MIRNA_MIRDEEP2        } from '../subworkflows/nf-core/fastq
 include { CONTAMINANT_FILTER               } from '../subworkflows/local/contaminant_filter/main'
 include { GENOME_QUANT                     } from '../subworkflows/local/genome_quant'
 include { MIRNA_QUANT                      } from '../subworkflows/local/mirna_quant'
-include { MIRDEEP2                         } from '../subworkflows/local/mirdeep2'
 // plugins
 include { paramsSummaryMap                 } from 'plugin/nf-validation'