Migrate bowtie #1026

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Triggered via pull request September 25, 2024 21:49

synchronize #444

nschcolnicov:migrate_bowtie

Status Failure

Total duration 24m 6s

Artifacts –

ci.yml

on: pull_request

Matrix: Run pipeline with test data

Annotations

9 errors and 4 warnings

Run pipeline with test data (4, 23.10.4, docker)

Process completed with exit code 1.

nf - test_skipfastp.test_skipfastp: nf - test_skipfastp#L1

Assertion failed: 1 of 10 assertions failed

nf - test_nextflex.test_nextflex: nf - test_nextflex#L1

Assertion failed: 1 of 7 assertions failed

Run pipeline with test data (3, 23.10.4, docker)

Process completed with exit code 1.

nf - test_mirgenedb.test_mirgenedb: nf - test_mirgenedb#L1

Assertion failed: 1 of 8 assertions failed

Run pipeline with test data (2, 23.10.4, docker)

Process completed with exit code 1.

Run pipeline with test data (1, 23.10.4, docker)

Process completed with exit code 1.

nf - test_contamination_tech_reps.test_contamination_tech_reps: nf - test_contamination_tech_reps#L1

Assertion failed: 1 of 8 assertions failed

nf - test_umi.test_umi: nf - test_umi#L1

Assertion failed: 1 of 10 assertions failed

Run pipeline with test data (4, 23.10.4, docker)

The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

Run pipeline with test data (3, 23.10.4, docker)

The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

Run pipeline with test data (2, 23.10.4, docker)

The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

Run pipeline with test data (1, 23.10.4, docker)

The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/