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Pull requests: nf-core/modules

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Pull requests list

Fastq align dedup bismark
#6998 opened Nov 15, 2024 by sateeshperi Loading…
1
@sateeshperi
build: Add environment.yml for doubletdetection
#6997 opened Nov 14, 2024 by edmundmiller Loading…
@edmundmiller
port parabricks/indexgvcf to nf-test
#6996 opened Nov 14, 2024 by famosab Loading…
17 tasks
port parabricks/deepvariant to nf-test
#6995 opened Nov 14, 2024 by famosab Loading…
17 tasks
1
update malt/build module
#6994 opened Nov 14, 2024 by LilyAnderssonLee Loading…
17 tasks
1
1
port parabricks/mutectcaller to nf-test
#6991 opened Nov 14, 2024 by famosab Loading…
17 tasks
1
Update busco_busco config and windowmasker_convert config
#6990 opened Nov 14, 2024 by mahesh-panchal Loading…
1 of 17 tasks
port parabricks/genotypegvcf to nf-test
#6980 opened Nov 13, 2024 by famosab Loading…
17 tasks
Port parabricks/dbsnp to nf-test
#6977 opened Nov 12, 2024 by famosab Loading…
4 of 17 tasks
1
Parabricks haplotypecaller version update and tests migrated to nf-test help wanted Extra attention is needed
#6976 opened Nov 12, 2024 by Furentsu Loading…
6 of 17 tasks
@Furentsu
17
Add nanoqc module Ready for Review
#6969 opened Nov 11, 2024 by lfreitasl Loading…
11 of 16 tasks
1
@lfreitasl
5
New module: hostile/clean
#6966 opened Nov 11, 2024 by jfy133 Loading…
17 tasks
3
Adding celda/decontx module
#6960 opened Nov 8, 2024 by lea-lenhardtackovic Loading…
12 of 14 tasks
11
Add GPU-based tests
#6953 opened Nov 7, 2024 by mashehu Loading…
11
Add missing file input to bcftools/annotate
#6942 opened Nov 6, 2024 by fellen31 Loading…
17 tasks
Remove langage server warnings
#6937 opened Nov 5, 2024 by maxulysse Loading…
17 tasks
2
Add coptr module
#6935 opened Nov 5, 2024 by ramirobarrantes Loading…
17 tasks
1
Migrating basicpy to nf-test
#6929 opened Nov 4, 2024 by kbestak Loading…
6 of 17 tasks
1
3
fix read variable in for loop
#6921 opened Nov 1, 2024 by MartinPippel Loading…
17 tasks
@MartinPippel
2
Bump GUNC and add gunc/run test
#6920 opened Nov 1, 2024 by dialvarezs • Draft
1 of 17 tasks
3
bump ALL gatk4 modules
#6917 opened Oct 31, 2024 by matthdsm Loading…
17 tasks
19
Add scds module
#6907 opened Oct 30, 2024 by cakirb Loading…
11 of 17 tasks
7
move torchtune to nfcore
#6901 opened Oct 29, 2024 by caraiz2001 Loading…
2 of 17 tasks
11
Add STIMULUS/CHECKTORCHMODEL
#6898 opened Oct 29, 2024 by itrujnara Loading…
12 of 14 tasks
2
2
Add stimulus analysisdefault
#6893 opened Oct 29, 2024 by tombch Loading…
7 of 17 tasks
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