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update changelog and docs
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nvnieuwk committed Feb 13, 2025
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Expand Up @@ -19,6 +19,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
6. Removed the old output publishing code and used the new workflow output definitions instead
7. Bumped the minimal nextflow version to 24.10.0
8. VCFanno will now run when `--vcfanno_toml` has been given and `--annotate` has not been given. You still need to supply `--annotate` to get the full annotation, but this can be used check for common variants without having to perform full annotation.
9. Changed the `--annotations_filter` parameter to a `--filter` parameter. This parameter takes an argument of `bcftools filter` to filter the resulting VCFs.

### `Fixed`

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