Add proper testing + fix some issues found #213
nvnieuwkAnnotations
58 errors and 8 warnings
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Run nf-test with bam_variant_calling_wisecondorx-latest-everything
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Run nf-test with vcf_concat_bcftools-23.10.0
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Run nf-test with vcf_merge_callers_jasmine-23.10.0
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Run nf-test with bam_repeat_estimation_expansionhunter-23.10.0
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Run nf-test with bam_variant_calling_manta-latest-everything
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Run nf-test with bam_variant_calling_manta-23.10.0
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Run nf-test with bam_prepare_samtools-23.10.0
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Run nf-test with vcf_annotate_vep_annotsv_vcfanno-23.10.0
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Run nf-test with vcf_annotate_vep_annotsv_vcfanno-23.10.0
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Run nf-test with bam_cnv_calling-latest-everything
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Run nf-test with bam_cnv_calling-latest-everything
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Run nf-test with bam_variant_calling_qdnaseq-23.10.0
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Run nf-test with bam_variant_calling_qdnaseq-23.10.0
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Run nf-test with pipeline_repeats-latest-everything
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Run nf-test with pipeline_repeats-latest-everything
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Run nf-test with bam_variant_calling_smoove-latest-everything
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Run nf-test with vcf_merge_family_jasmine-23.10.0
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Run nf-test with vcf_merge_family_jasmine-23.10.0
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Run nf-test with vcf_merge_family_jasmine-latest-everything
The job was canceled because "latest-everything_bam_v_6" failed.
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Run nf-test with vcf_merge_family_jasmine-latest-everything
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Run nf-test with bam_variant_calling_gridss-latest-everything
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Run nf-test with bam_variant_calling_gridss-23.10.0
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Run nf-test with pipeline_cnv-latest-everything
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Run nf-test with pipeline_cnv-latest-everything
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Run nf-test with bam_sv_calling-latest-everything
The job was canceled because "latest-everything_bam_v_6" failed.
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Run nf-test with bam_sv_calling-latest-everything
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Run nf-test with pipeline_sv-23.10.0
The job was canceled because "latest-everything_bam_v_6" failed.
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Run nf-test with pipeline_sv-23.10.0
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Run nf-test with bam_cnv_calling-23.10.0
The job was canceled because "latest-everything_bam_v_6" failed.
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Run nf-test with bam_cnv_calling-23.10.0
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Run nf-test with vcf_concat_bcftools-latest-everything
The job was canceled because "latest-everything_bam_v_6" failed.
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Run nf-test with pipeline_cnv-23.10.0
The job was canceled because "latest-everything_bam_v_6" failed.
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Run nf-test with pipeline_cnv-23.10.0
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Run nf-test with vcf_merge_callers_jasmine-latest-everything
The job was canceled because "latest-everything_bam_v_6" failed.
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Run nf-test with bam_variant_calling_wisecondorx-23.10.0
The job was canceled because "latest-everything_bam_v_6" failed.
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Run nf-test with bam_variant_calling_wisecondorx-23.10.0
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Run nf-test with bam_repeat_estimation_expansionhunter-latest-everything
The job was canceled because "latest-everything_bam_v_6" failed.
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Run nf-test with bam_variant_calling_qdnaseq-latest-everything
The job was canceled because "latest-everything_bam_v_6" failed.
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Run nf-test with bam_variant_calling_qdnaseq-latest-everything
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Run nf-test with bam_sv_calling-23.10.0
The job was canceled because "latest-everything_bam_v_6" failed.
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Run nf-test with pipeline_repeats-23.10.0
The job was canceled because "latest-everything_bam_v_6" failed.
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Run nf-test with pipeline_repeats-23.10.0
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Run nf-test with bam_sv_calling-23.10.0
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Run nf-test with pipeline_families-23.10.0
The job was canceled because "latest-everything_bam_v_6" failed.
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Run nf-test with pipeline_families-23.10.0
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Run nf-test with pipeline_families-23.10.0
ENOENT: no such file or directory, stat '/home/runner/work/nf-cmgg-structural/nf-cmgg-structural/.nf-test/tests/7e156a42b4fff76937ce36f12cca0263/.nextflow/plr/b311f6a4-3a55-4bb8-84fc-815c1c2a2531/nf-validation-1.1.3/META-INF/MANIFEST.MF'
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Run nf-test with pipeline_duplicates-23.10.0
The job was canceled because "latest-everything_bam_v_6" failed.
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Run nf-test with pipeline_duplicates-23.10.0
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Run nf-test with pipeline_sv-latest-everything
The job was canceled because "latest-everything_bam_v_6" failed.
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Run nf-test with pipeline_sv-latest-everything
ENOENT: no such file or directory, stat '/home/runner/work/nf-cmgg-structural/nf-cmgg-structural/.nf-test/tests/8f1542f7e52996b467a7d7333e1f84cf/.nextflow/plr/b6fae544-d493-4b3e-9846-3faf07248b18/nf-validation-1.1.3/META-INF/MANIFEST.MF'
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Run nf-test with pipeline_sv-latest-everything
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Run nf-test with pipeline_duplicates-latest-everything
The job was canceled because "latest-everything_bam_v_6" failed.
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Run nf-test with pipeline_duplicates-latest-everything
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Run nf-test with pipeline_duplicates-latest-everything
ENOENT: no such file or directory, stat '/home/runner/work/nf-cmgg-structural/nf-cmgg-structural/.nf-test/tests/2c6a862798769df1569ff3485f9e3a2b/.nextflow/plr/78bd3f79-c7ac-4077-a4aa-1d48fd648858/nf-validation-1.1.3/META-INF/MANIFEST.MF'
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Run nf-test with vcf_annotate_vep_annotsv_vcfanno-latest-everything
The job was canceled because "latest-everything_bam_v_6" failed.
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Run nf-test with vcf_annotate_vep_annotsv_vcfanno-latest-everything
Process completed with exit code 1.
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Run nf-test with pipeline_families-latest-everything
The job was canceled because "latest-everything_bam_v_6" failed.
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Run nf-test with pipeline_families-latest-everything
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Run nf-test with bam_sv_calling-23.10.0
Runner GitHub Actions 9 did not respond to a cancelation request with 00:05:00.
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Run nf-test with pipeline_repeats-23.10.0
Runner GitHub Actions 19 did not respond to a cancelation request with 00:05:00.
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Run nf-test with pipeline_families-23.10.0
Runner GitHub Actions 18 did not respond to a cancelation request with 00:05:00.
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Run nf-test with pipeline_duplicates-23.10.0
Runner GitHub Actions 17 did not respond to a cancelation request with 00:05:00.
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Run nf-test with pipeline_sv-latest-everything
Runner GitHub Actions 39 did not respond to a cancelation request with 00:05:00.
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Run nf-test with pipeline_duplicates-latest-everything
Runner GitHub Actions 37 did not respond to a cancelation request with 00:05:00.
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Run nf-test with vcf_annotate_vep_annotsv_vcfanno-latest-everything
Runner GitHub Actions 40 did not respond to a cancelation request with 00:05:00.
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Run nf-test with pipeline_families-latest-everything
Runner GitHub Actions 38 did not respond to a cancelation request with 00:05:00.
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Artifacts
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nf-test-workdir
Expired
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1.98 GB |
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