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Replace --annotations_filter with --filter #382

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Replace --annotations_filter with --filter

Replace --annotations_filter with --filter #382

Run time

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Job Run time
Run nf-test with pipeline_sv-24.10.0
6m 49s
Run nf-test with pipeline_cnv-24.10.0
6m 33s
Run nf-test with pipeline_repeats-24.10.0
4m 16s
Run nf-test with pipeline_duplicates-24.10.0
5m 58s
Run nf-test with pipeline_families-24.10.0
8m 54s
Run nf-test with bam_cnv_calling-24.10.0
5m 37s
Run nf-test with bam_prepare_samtools-24.10.0
5m 36s
Run nf-test with bam_repeat_estimation_expansionhunter-24.10.0
4m 3s
Run nf-test with bam_sv_calling-24.10.0
5m 33s
Run nf-test with bam_variant_calling_delly-24.10.0
3m 46s
Run nf-test with bam_variant_calling_manta-24.10.0
3m 42s
Run nf-test with bam_variant_calling_qdnaseq-24.10.0
4m 11s
Run nf-test with bam_variant_calling_smoove-24.10.0
4m 1s
Run nf-test with bam_variant_calling_wisecondorx-24.10.0
4m 55s
Run nf-test with vcf_annotate_vep_annotsv-24.10.0
5m 10s
Run nf-test with vcf_annotate_vcfanno-24.10.0
3m 24s
Run nf-test with vcf_concat_bcftools-24.10.0
3m 14s
Run nf-test with vcf_merge_callers_jasmine-24.10.0
5m 40s
Run nf-test with vcf_merge_family_jasmine-24.10.0
5m 43s
Run nf-test with pipeline_sv-latest-everything
3m 16s
Run nf-test with pipeline_cnv-latest-everything
4m 33s
Run nf-test with pipeline_repeats-latest-everything
3m 57s
Run nf-test with pipeline_duplicates-latest-everything
3m 28s
Run nf-test with pipeline_families-latest-everything
3m 17s
Run nf-test with bam_cnv_calling-latest-everything
5m 34s
Run nf-test with bam_prepare_samtools-latest-everything
3m 26s
Run nf-test with bam_repeat_estimation_expansionhunter-latest-everything
3m 36s
Run nf-test with bam_sv_calling-latest-everything
5m 9s
Run nf-test with bam_variant_calling_delly-latest-everything
3m 56s
Run nf-test with bam_variant_calling_manta-latest-everything
3m 48s
Run nf-test with bam_variant_calling_qdnaseq-latest-everything
4m 1s
Run nf-test with bam_variant_calling_smoove-latest-everything
4m 30s
Run nf-test with bam_variant_calling_wisecondorx-latest-everything
4m 24s
Run nf-test with vcf_annotate_vep_annotsv-latest-everything
2m 47s
Run nf-test with vcf_annotate_vcfanno-latest-everything
3m 12s
Run nf-test with vcf_concat_bcftools-latest-everything
2m 16s
Run nf-test with vcf_merge_callers_jasmine-latest-everything
2m 1s
Run nf-test with vcf_merge_family_jasmine-latest-everything
2m 15s
2h 46m 31s