fix samplesheet copying #370
nvnieuwkAnnotations
36 errors and 82 warnings
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Run nf-test with bam_variant_calling_delly-24.10.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with bam_variant_calling_wisecondorx-24.10.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with bam_variant_calling_smoove-24.10.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with bam_prepare_samtools-24.10.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with bam_variant_calling_qdnaseq-24.10.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with pipeline_repeats-24.10.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with vcf_concat_bcftools-24.10.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with bam_repeat_estimation_expansionhunter-24.10.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with bam_prepare_samtools-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with vcf_annotate_vep_annotsv_vcfanno-24.10.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with bam_variant_calling_manta-24.10.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with bam_cnv_calling-24.10.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with bam_sv_calling-24.10.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with vcf_merge_callers_jasmine-24.10.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with pipeline_duplicates-24.10.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with bam_repeat_estimation_expansionhunter-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with vcf_merge_family_jasmine-24.10.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with bam_cnv_calling-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with bam_variant_calling_manta-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with pipeline_sv-24.10.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with pipeline_cnv-24.10.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with bam_variant_calling_wisecondorx-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with bam_variant_calling_smoove-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with bam_variant_calling_qdnaseq-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with bam_sv_calling-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with vcf_concat_bcftools-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with pipeline_repeats-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with bam_variant_calling_delly-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with vcf_merge_callers_jasmine-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with pipeline_families-24.10.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with pipeline_cnv-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with pipeline_duplicates-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with vcf_merge_family_jasmine-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with vcf_annotate_vep_annotsv_vcfanno-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with pipeline_sv-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with pipeline_families-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with bam_variant_calling_delly-24.10.0
Failed to download action 'https://api.github.com/repos/nf-core/setup-nextflow/tarball/6c2e22b4d901f0c42ca66c5069f8026df026d165'. Error: Response status code does not indicate success: 504 (Gateway Timeout).
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Run nf-test with bam_variant_calling_delly-24.10.0
Back off 19.536 seconds before retry.
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Run nf-test with bam_variant_calling_delly-24.10.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with bam_variant_calling_wisecondorx-24.10.0
Failed to download action 'https://api.github.com/repos/nf-core/setup-nextflow/tarball/6c2e22b4d901f0c42ca66c5069f8026df026d165'. Error: Response status code does not indicate success: 504 (Gateway Timeout).
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Run nf-test with bam_variant_calling_wisecondorx-24.10.0
Back off 28.588 seconds before retry.
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Run nf-test with bam_variant_calling_wisecondorx-24.10.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with bam_variant_calling_smoove-24.10.0
Failed to download action 'https://api.github.com/repos/nf-core/setup-nextflow/tarball/6c2e22b4d901f0c42ca66c5069f8026df026d165'. Error: Response status code does not indicate success: 504 (Gateway Timeout).
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Run nf-test with bam_variant_calling_smoove-24.10.0
Back off 21.918 seconds before retry.
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Run nf-test with bam_variant_calling_smoove-24.10.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with bam_prepare_samtools-24.10.0
Failed to download action 'https://api.github.com/repos/jlumbroso/free-disk-space/tarball/54081f138730dfa15788a46383842cd2f914a1be'. Error: Response status code does not indicate success: 504 (Gateway Timeout).
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Run nf-test with bam_prepare_samtools-24.10.0
Back off 16.534 seconds before retry.
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Run nf-test with bam_prepare_samtools-24.10.0
Failed to download action 'https://api.github.com/repos/jlumbroso/free-disk-space/tarball/54081f138730dfa15788a46383842cd2f914a1be'. Error: Response status code does not indicate success: 504 (Gateway Timeout).
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Run nf-test with bam_prepare_samtools-24.10.0
Back off 11.106 seconds before retry.
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Run nf-test with bam_prepare_samtools-24.10.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with bam_variant_calling_qdnaseq-24.10.0
Failed to download action 'https://api.github.com/repos/nf-core/setup-nextflow/tarball/6c2e22b4d901f0c42ca66c5069f8026df026d165'. Error: Response status code does not indicate success: 504 (Gateway Timeout).
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Run nf-test with bam_variant_calling_qdnaseq-24.10.0
Back off 16.244 seconds before retry.
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Run nf-test with bam_variant_calling_qdnaseq-24.10.0
Failed to download action 'https://api.github.com/repos/nf-core/setup-nextflow/tarball/6c2e22b4d901f0c42ca66c5069f8026df026d165'. Error: Response status code does not indicate success: 503 (Service Unavailable). A001:2069D7:4AE022E:961D2B4:67A49066
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Run nf-test with bam_variant_calling_qdnaseq-24.10.0
Back off 16.133 seconds before retry.
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Run nf-test with bam_variant_calling_qdnaseq-24.10.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with pipeline_repeats-24.10.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with pipeline_repeats-24.10.0
Failed to download action 'https://api.github.com/repos/nf-core/setup-nextflow/tarball/6c2e22b4d901f0c42ca66c5069f8026df026d165'. Error: Response status code does not indicate success: 504 (Gateway Timeout).
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Run nf-test with pipeline_repeats-24.10.0
Back off 19.129 seconds before retry.
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Run nf-test with vcf_concat_bcftools-24.10.0
Failed to download action 'https://api.github.com/repos/jlumbroso/free-disk-space/tarball/54081f138730dfa15788a46383842cd2f914a1be'. Error: Response status code does not indicate success: 504 (Gateway Timeout).
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Run nf-test with vcf_concat_bcftools-24.10.0
Back off 28.356 seconds before retry.
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Run nf-test with vcf_concat_bcftools-24.10.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with bam_repeat_estimation_expansionhunter-24.10.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with bam_repeat_estimation_expansionhunter-24.10.0
Failed to download action 'https://api.github.com/repos/nf-core/setup-nextflow/tarball/6c2e22b4d901f0c42ca66c5069f8026df026d165'. Error: Response status code does not indicate success: 504 (Gateway Timeout).
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Run nf-test with bam_repeat_estimation_expansionhunter-24.10.0
Back off 23.893 seconds before retry.
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Run nf-test with bam_repeat_estimation_expansionhunter-24.10.0
Failed to download action 'https://api.github.com/repos/nf-core/setup-nextflow/tarball/6c2e22b4d901f0c42ca66c5069f8026df026d165'. Error: Response status code does not indicate success: 504 (Gateway Timeout).
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Run nf-test with bam_repeat_estimation_expansionhunter-24.10.0
Back off 16.36 seconds before retry.
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Run nf-test with bam_prepare_samtools-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with vcf_annotate_vep_annotsv_vcfanno-24.10.0
Failed to download action 'https://api.github.com/repos/nf-core/setup-nextflow/tarball/6c2e22b4d901f0c42ca66c5069f8026df026d165'. Error: Response status code does not indicate success: 504 (Gateway Timeout).
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Run nf-test with vcf_annotate_vep_annotsv_vcfanno-24.10.0
Back off 17.554 seconds before retry.
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Run nf-test with vcf_annotate_vep_annotsv_vcfanno-24.10.0
Failed to download action 'https://api.github.com/repos/nf-core/setup-nextflow/tarball/6c2e22b4d901f0c42ca66c5069f8026df026d165'. Error: Response status code does not indicate success: 504 (Gateway Timeout).
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Run nf-test with vcf_annotate_vep_annotsv_vcfanno-24.10.0
Back off 11.374 seconds before retry.
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Run nf-test with vcf_annotate_vep_annotsv_vcfanno-24.10.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with bam_variant_calling_manta-24.10.0
Failed to download action 'https://api.github.com/repos/jlumbroso/free-disk-space/tarball/54081f138730dfa15788a46383842cd2f914a1be'. Error: Response status code does not indicate success: 504 (Gateway Timeout).
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Run nf-test with bam_variant_calling_manta-24.10.0
Back off 10.837 seconds before retry.
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Run nf-test with bam_variant_calling_manta-24.10.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with bam_cnv_calling-24.10.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with bam_cnv_calling-24.10.0
Failed to download action 'https://api.github.com/repos/nf-core/setup-nextflow/tarball/6c2e22b4d901f0c42ca66c5069f8026df026d165'. Error: Response status code does not indicate success: 504 (Gateway Timeout).
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Run nf-test with bam_cnv_calling-24.10.0
Back off 23.925 seconds before retry.
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Run nf-test with bam_sv_calling-24.10.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with bam_sv_calling-24.10.0
Failed to download action 'https://api.github.com/repos/nf-core/setup-nextflow/tarball/6c2e22b4d901f0c42ca66c5069f8026df026d165'. Error: Response status code does not indicate success: 504 (Gateway Timeout).
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Run nf-test with bam_sv_calling-24.10.0
Back off 17.973 seconds before retry.
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Run nf-test with bam_sv_calling-24.10.0
Failed to download action 'https://api.github.com/repos/nf-core/setup-nextflow/tarball/6c2e22b4d901f0c42ca66c5069f8026df026d165'. Error: Response status code does not indicate success: 503 (Service Unavailable). DC21:342A31:3988CA3:7371F62:67A49067
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Run nf-test with bam_sv_calling-24.10.0
Back off 20.971 seconds before retry.
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Run nf-test with vcf_merge_callers_jasmine-24.10.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with pipeline_duplicates-24.10.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with pipeline_duplicates-24.10.0
Failed to download action 'https://api.github.com/repos/jlumbroso/free-disk-space/tarball/54081f138730dfa15788a46383842cd2f914a1be'. Error: Response status code does not indicate success: 504 (Gateway Timeout).
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Run nf-test with pipeline_duplicates-24.10.0
Back off 25.803 seconds before retry.
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Run nf-test with bam_repeat_estimation_expansionhunter-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with vcf_merge_family_jasmine-24.10.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with bam_cnv_calling-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with bam_variant_calling_manta-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with pipeline_sv-24.10.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with pipeline_sv-24.10.0
Failed to download action 'https://api.github.com/repos/nf-core/setup-nextflow/tarball/6c2e22b4d901f0c42ca66c5069f8026df026d165'. Error: Response status code does not indicate success: 504 (Gateway Timeout).
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Run nf-test with pipeline_sv-24.10.0
Back off 20.929 seconds before retry.
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Run nf-test with pipeline_sv-24.10.0
Failed to download action 'https://api.github.com/repos/nf-core/setup-nextflow/tarball/6c2e22b4d901f0c42ca66c5069f8026df026d165'. Error: Response status code does not indicate success: 504 (Gateway Timeout).
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Run nf-test with pipeline_sv-24.10.0
Back off 12.225 seconds before retry.
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Run nf-test with pipeline_cnv-24.10.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with pipeline_cnv-24.10.0
Failed to download action 'https://api.github.com/repos/nf-core/setup-nextflow/tarball/6c2e22b4d901f0c42ca66c5069f8026df026d165'. Error: Response status code does not indicate success: 504 (Gateway Timeout).
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Run nf-test with pipeline_cnv-24.10.0
Back off 16.706 seconds before retry.
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Run nf-test with pipeline_cnv-24.10.0
Failed to download action 'https://api.github.com/repos/nf-core/setup-nextflow/tarball/6c2e22b4d901f0c42ca66c5069f8026df026d165'. Error: Response status code does not indicate success: 503 (Service Unavailable). 8848:34E51E:4ED0FC8:9DC3187:67A49066
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Run nf-test with pipeline_cnv-24.10.0
Back off 27.965 seconds before retry.
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Run nf-test with bam_variant_calling_wisecondorx-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with bam_variant_calling_smoove-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with bam_variant_calling_qdnaseq-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with bam_sv_calling-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with vcf_concat_bcftools-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with pipeline_repeats-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with bam_variant_calling_delly-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with vcf_merge_callers_jasmine-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with pipeline_families-24.10.0
Failed to download action 'https://api.github.com/repos/mikepenz/action-junit-report/tarball/150e2f992e4fad1379da2056d1d1c279f520e058'. Error: Response status code does not indicate success: 504 (Gateway Timeout).
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Run nf-test with pipeline_families-24.10.0
Back off 14.139 seconds before retry.
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Run nf-test with pipeline_families-24.10.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with pipeline_cnv-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with pipeline_duplicates-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with vcf_merge_family_jasmine-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with vcf_annotate_vep_annotsv_vcfanno-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with pipeline_sv-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with pipeline_families-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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