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improve the efficiency of samplesheet handling (#104) #367

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improve the efficiency of samplesheet handling (#104)

improve the efficiency of samplesheet handling (#104) #367

Run time

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Job Run time
Run nf-test with pipeline_sv-24.10.0
7m 30s
Run nf-test with pipeline_cnv-24.10.0
8m 15s
Run nf-test with pipeline_repeats-24.10.0
4m 30s
Run nf-test with pipeline_duplicates-24.10.0
6m 48s
Run nf-test with pipeline_families-24.10.0
9m 1s
Run nf-test with bam_cnv_calling-24.10.0
7m 11s
Run nf-test with bam_prepare_samtools-24.10.0
5m 19s
Run nf-test with bam_repeat_estimation_expansionhunter-24.10.0
3m 53s
Run nf-test with bam_sv_calling-24.10.0
5m 29s
Run nf-test with bam_variant_calling_delly-24.10.0
4m 22s
Run nf-test with bam_variant_calling_manta-24.10.0
3m 51s
Run nf-test with bam_variant_calling_qdnaseq-24.10.0
9m 0s
Run nf-test with bam_variant_calling_smoove-24.10.0
5m 24s
Run nf-test with bam_variant_calling_wisecondorx-24.10.0
3m 59s
Run nf-test with vcf_annotate_vep_annotsv_vcfanno-24.10.0
4m 46s
Run nf-test with vcf_concat_bcftools-24.10.0
3m 22s
Run nf-test with vcf_merge_callers_jasmine-24.10.0
8m 46s
Run nf-test with vcf_merge_family_jasmine-24.10.0
7m 40s
Run nf-test with pipeline_sv-latest-everything
2m 51s
Run nf-test with pipeline_cnv-latest-everything
3m 35s
Run nf-test with pipeline_repeats-latest-everything
3m 31s
Run nf-test with pipeline_duplicates-latest-everything
3m 26s
Run nf-test with pipeline_families-latest-everything
2m 52s
Run nf-test with bam_cnv_calling-latest-everything
5m 8s
Run nf-test with bam_prepare_samtools-latest-everything
3m 53s
Run nf-test with bam_repeat_estimation_expansionhunter-latest-everything
3m 50s
Run nf-test with bam_sv_calling-latest-everything
5m 4s
Run nf-test with bam_variant_calling_delly-latest-everything
3m 14s
Run nf-test with bam_variant_calling_manta-latest-everything
3m 44s
Run nf-test with bam_variant_calling_qdnaseq-latest-everything
3m 56s
Run nf-test with bam_variant_calling_smoove-latest-everything
4m 22s
Run nf-test with bam_variant_calling_wisecondorx-latest-everything
3m 58s
Run nf-test with vcf_annotate_vep_annotsv_vcfanno-latest-everything
2m 3s
Run nf-test with vcf_concat_bcftools-latest-everything
1m 19s
Run nf-test with vcf_merge_callers_jasmine-latest-everything
1m 1s
Run nf-test with vcf_merge_family_jasmine-latest-everything
1m 4s
2h 47m 57s