Bump rust dependency versions (except pyo3, rustc_hash, and miette)

[sezna]

This PR updates all of our Rust dependencies to their latest versions, with the exception of:

• pyo3, which will require some more work as its API has changed-
• miette, which doesn't seem to support wasm on certain platforms post-v5? Needs more investigation
• rustc_hash, which had a breaking change in the order of iteration over FxHashMaps.

Note: we apparently iterate over hashmaps in various places, and then do snapshot tests on the results. rustc_hash changed some iteration ordering, so updating this dependency caused some expect tests to need updating. In a perfect world, we'd track down these iterations and make them deterministic. But, the effort/outcome ratio is so low there, since iteration order is deterministic within a single version of rustc_hash, I say we just update the expect tests and move on.

I also removed patch-version pins from our Cargo.toml where they existed, since we usually just specify major.minor.

#1886: issue to track updating pyo3
#1877: issue to track updating rustc_hash

I'm not sure we want to update miette any time soon -- it breaks us in a big way and we are happy with the current version I think. But we should have a discussion about that. So I filed #1887 to track that.