fix: update pnpm to v9.13.1

[renovate]

This PR contains the following updates:

Package	Change	Age	Adoption	Passing	Confidence
pnpm (source)	9.11.0+sha256.1c0e33f70e5df9eede84a357bdfa0b1f9dba6e58194628d48a1055756f553754 -> 9.13.1

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Release Notes

pnpm/pnpm (pnpm)

v9.13.1

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v9.13.0

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v9.12.3

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Patch Changes

• Don't purge node_modules, when typing "n" in the prompt that asks whether to remove node_modules before installation #​8655.
• Fix a bug causing pnpm to infinitely spawn itself when manage-package-manager-versions=true is set and the .tools directory is corrupt.
• Use crypto.hash, when available, for improved performance #​8629.
• Fixed a race condition in temporary file creation in the store by including worker thread ID in filename. Previously, multiple worker threads could attempt to use the same temporary file. Temporary files now include both process ID and thread ID for uniqueness #​8703.
• All commands should read settings from the package.json at the root of the workspace #​8667.
• When manage-package-manager-versions is set to true, errors spawning a self-managed version of pnpm will now be shown (instead of being silent).
• Pass the find command to npm, it is an alias for npm search

v9.12.2

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Patch Changes

• When checking whether a file in the store has executable permissions, the new approach checks if at least one of the executable bits (owner, group, and others) is set to 1. Previously, a file was incorrectly considered executable only when all the executable bits were set to 1. This fix ensures that files with any executable permission, regardless of the user class, are now correctly identified as executable #​8546.

v9.12.1

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Patch Changes

• pnpm update --latest should not update the automatically installed peer dependencies #​6657.
• pnpm publish should be able to publish from a local tarball #​7950.
• The pnpx command should work correctly on Windows, when pnpm is installed via the standalone installation script #​8608.
• Prevent EBUSY errors caused by creating symlinks in parallel dlx processes #​8604.
• Fix maximum call stack size exceeded error related to circular workspace dependencies #​8599.

v9.12.0

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Minor Changes

• Fix peer dependency resolution dead lock #​8570. This change might change some of the keys in the snapshots field inside pnpm-lock.yaml but it should happen very rarely.

• pnpm outdated command supports now a --sort-by=name option for sorting outdated dependencies by package name #​8523.

• Added the ability for overrides to remove dependencies by specifying "-" as the field value #​8572. For example, to remove lodash from the dependencies, use this configuration in package.json:

  {
    "pnpm": {
      "overrides": {
        "lodash": "-"
      }
    }
  }

Patch Changes

• Fixed an issue where pnpm list --json pkg showed "private": false for a private package #​8519.
• Packages with libc that differ from pnpm.supportedArchitectures.libc are not downloaded #​7362.
• Prevent ENOENT errors caused by running store prune in parallel #​8586.
• Add issues alias to pnpm bugs #​8596.

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