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VS-1596 Put all references in one structure Build and Test GATK 4 #5063: Pull request #9098 synchronize by gbggrant
February 18, 2025 18:25 4h 26m 19s gg_VS-1596_AllRefsInOneStructure
gg_VS-1596_AllRefsInOneStructure
February 18, 2025 18:25 4h 26m 19s
VS-1596 Put all references in one structure Build and Test GATK 4 #5062: Pull request #9098 opened by gbggrant
February 18, 2025 18:24 5h 56m 14s gg_VS-1596_AllRefsInOneStructure
gg_VS-1596_AllRefsInOneStructure
February 18, 2025 18:24 5h 56m 14s
VS-1246 Add more disk and add memory retry handling on SelectVariants task Build and Test GATK 4 #5061: Pull request #9096 synchronize by gbggrant
February 18, 2025 16:33 3h 53m 27s gg_VS-1246_MoreDiskAndBetterMemOnSelectVariants
gg_VS-1246_MoreDiskAndBetterMemOnSelectVariants
February 18, 2025 16:33 3h 53m 27s
VS-1246 Add more disk and add memory retry handling on SelectVariants task Build and Test GATK 4 #5060: Pull request #9096 synchronize by gbggrant
February 13, 2025 20:32 4h 39m 29s gg_VS-1246_MoreDiskAndBetterMemOnSelectVariants
gg_VS-1246_MoreDiskAndBetterMemOnSelectVariants
February 13, 2025 20:32 4h 39m 29s
Lots of little changes to Permutect dataset generation (#9094) Build and Test GATK 4 #5059: Commit b0484ad pushed by davidbenjamin
February 13, 2025 19:44 46m 15s master
master
February 13, 2025 19:44 46m 15s
VS-1246 Add more disk and add memory retry handling on SelectVariants task Build and Test GATK 4 #5058: Pull request #9096 synchronize by gbggrant
February 13, 2025 14:18 5h 18m 54s gg_VS-1246_MoreDiskAndBetterMemOnSelectVariants
gg_VS-1246_MoreDiskAndBetterMemOnSelectVariants
February 13, 2025 14:18 5h 18m 54s
VS-1246 Add more disk and add memory retry handling on SelectVariants task Build and Test GATK 4 #5057: Pull request #9096 synchronize by gbggrant
February 13, 2025 14:17 4h 47m 47s gg_VS-1246_MoreDiskAndBetterMemOnSelectVariants
gg_VS-1246_MoreDiskAndBetterMemOnSelectVariants
February 13, 2025 14:17 4h 47m 47s
VS-1246 Add more disk and add memory retry handling on SelectVariants task Build and Test GATK 4 #5056: Pull request #9096 synchronize by gbggrant
February 13, 2025 00:55 4h 11m 18s gg_VS-1246_MoreDiskAndBetterMemOnSelectVariants
gg_VS-1246_MoreDiskAndBetterMemOnSelectVariants
February 13, 2025 00:55 4h 11m 18s
VS-1246 Add more disk and add memory retry handling on SelectVariants task Build and Test GATK 4 #5055: Pull request #9096 opened by gbggrant
February 12, 2025 16:38 4h 8m 51s gg_VS-1246_MoreDiskAndBetterMemOnSelectVariants
gg_VS-1246_MoreDiskAndBetterMemOnSelectVariants
February 12, 2025 16:38 4h 8m 51s
BQSR: avoid throwing an error when read group is missing in the recal table, and some refactoring. Build and Test GATK 4 #5054: Pull request #9020 synchronize by takutosato
February 11, 2025 17:59 44m 44s ts_bqsr_read_group
ts_bqsr_read_group
February 11, 2025 17:59 44m 44s
BQSR: avoid throwing an error when read group is missing in the recal table, and some refactoring. Build and Test GATK 4 #5053: Pull request #9020 synchronize by takutosato
February 11, 2025 17:34 45m 38s ts_bqsr_read_group
ts_bqsr_read_group
February 11, 2025 17:34 45m 38s
CRAM 3.1 read support Build and Test GATK 4 #5052: Pull request #9095 opened by cmnbroad
February 11, 2025 15:24 3m 35s cn_cram_31_support
cn_cram_31_support
February 11, 2025 15:24 3m 35s
Lots of little changes to Permutect dataset generation Build and Test GATK 4 #5051: Pull request #9094 opened by davidbenjamin
February 10, 2025 21:22 44m 45s db_permutect_data
db_permutect_data
February 10, 2025 21:22 44m 45s
Add samtools for file format testing. Build and Test GATK 4 #5050: Pull request #9093 synchronize by cmnbroad
February 10, 2025 20:54 50m 24s cn_add_samtools
cn_add_samtools
February 10, 2025 20:54 50m 24s
Add samtools for file format testing. Build and Test GATK 4 #5049: Pull request #9093 synchronize by cmnbroad
February 10, 2025 20:06 44m 21s cn_add_samtools
cn_add_samtools
February 10, 2025 20:06 44m 21s
Add samtools for file format testing. Build and Test GATK 4 #5048: Pull request #9093 opened by cmnbroad
February 10, 2025 20:03 3m 35s cn_add_samtools
cn_add_samtools
February 10, 2025 20:03 3m 35s
BQSR: avoid throwing an error when read group is missing in the recal table, and some refactoring. Build and Test GATK 4 #5047: Pull request #9020 synchronize by takutosato
February 9, 2025 14:31 45m 44s ts_bqsr_read_group
ts_bqsr_read_group
February 9, 2025 14:31 45m 44s
Fix exomes bug for 200 < # samples < 400 [VS-1533] Build and Test GATK 4 #5046: Pull request #9092 opened by mcovarr
February 7, 2025 23:19 5h 21m 34s vs_1553_exomes_bug
vs_1553_exomes_bug
February 7, 2025 23:19 5h 21m 34s
v4 all the GitHub action things [VS-1573] Build and Test GATK 4 #5045: Pull request #9091 opened by mcovarr
February 6, 2025 22:00 4h 29m 16s vs_1573_v4_the_things
vs_1573_v4_the_things
February 6, 2025 22:00 4h 29m 16s
VS-1558 release the memory Build and Test GATK 4 #5044: Pull request #9087 synchronize by gbggrant
February 6, 2025 21:35 30m 42s gg_VS-1558_ReleaseTheMemory
gg_VS-1558_ReleaseTheMemory
February 6, 2025 21:35 30m 42s
Create tools for SV VCF cleaning Build and Test GATK 4 #5043: Pull request #8996 synchronize by kjaisingh
February 6, 2025 02:45 43m 29s kj_sv_cleanvcf
kj_sv_cleanvcf
February 6, 2025 02:45 43m 29s
Vs 1561 Merging in new monitoring script Build and Test GATK 4 #5042: Pull request #9089 opened by koncheto-broad
February 5, 2025 20:54 3h 50m 28s VS-1561
VS-1561
February 5, 2025 20:54 3h 50m 28s
VS-1558 release the memory Build and Test GATK 4 #5041: Pull request #9087 synchronize by gbggrant
February 5, 2025 18:17 4h 2m 20s gg_VS-1558_ReleaseTheMemory
gg_VS-1558_ReleaseTheMemory
February 5, 2025 18:17 4h 2m 20s
VS-1558 release the memory Build and Test GATK 4 #5040: Pull request #9087 synchronize by gbggrant
February 4, 2025 16:00 3h 32m 34s gg_VS-1558_ReleaseTheMemory
gg_VS-1558_ReleaseTheMemory
February 4, 2025 16:00 3h 32m 34s
VS-1558 release the memory Build and Test GATK 4 #5039: Pull request #9087 synchronize by gbggrant
February 4, 2025 16:00 3h 22m 55s gg_VS-1558_ReleaseTheMemory
gg_VS-1558_ReleaseTheMemory
February 4, 2025 16:00 3h 22m 55s