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UPHL-BioNGS · Jan 29, 2025 · 15961fb · 15961fb
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diff --git a/.github/workflows/add_fastani_ref.yml b/.github/workflows/add_fastani_ref.yml
@@ -76,7 +76,7 @@ jobs:
             ls  grandeur2/multiqc/multiqc_report.html
 
         - name: Clean up Disk space
-          uses: jlumbroso/free-disk-space
+          uses: jlumbroso/free-disk-space@main
 
         - name: Run Grandeur with refs and ref list
           run: |

diff --git a/.github/workflows/current.yml b/.github/workflows/current.yml
@@ -11,7 +11,7 @@ jobs:
         uses: actions/checkout@v4
 
       - name: Clean up Disk space
-        uses: jlumbroso/free-disk-space
+        uses: jlumbroso/free-disk-space@main
 
       - name: Install Nextflow
         run: |

diff --git a/.github/workflows/ecoli.yml b/.github/workflows/ecoli.yml
@@ -11,7 +11,7 @@ jobs:
         uses: actions/checkout@v4
 
       - name: Clean up Disk space
-        uses: jlumbroso/free-disk-space
+        uses: jlumbroso/free-disk-space@main
 
       - name: Install Nextflow
         run: |

diff --git a/.github/workflows/gc.yml b/.github/workflows/gc.yml
@@ -11,7 +11,7 @@ jobs:
         uses: actions/checkout@v4
 
       - name: Clean up Disk space
-        uses: jlumbroso/free-disk-space
+        uses: jlumbroso/free-disk-space@main
 
       - name: Install Nextflow
         run: |

diff --git a/.github/workflows/just_msa.yml b/.github/workflows/just_msa.yml
@@ -11,7 +11,7 @@ jobs:
         uses: actions/checkout@v4
 
       - name: Clean up Disk space
-        uses: jlumbroso/free-disk-space
+        uses: jlumbroso/free-disk-space@main
 
       - name: Install Nextflow
         run: |

diff --git a/.github/workflows/klebsiella.yml b/.github/workflows/klebsiella.yml
@@ -11,7 +11,7 @@ jobs:
         uses: actions/checkout@v4
 
       - name: Clean up Disk space
-        uses: jlumbroso/free-disk-space
+        uses: jlumbroso/free-disk-space@main
 
       - name: Install Nextflow
         run: |

diff --git a/.github/workflows/legionella.yml b/.github/workflows/legionella.yml
@@ -11,7 +11,7 @@ jobs:
         uses: actions/checkout@v4
 
       - name: Clean up Disk space
-        uses: jlumbroso/free-disk-space
+        uses: jlumbroso/free-disk-space@main
 
       - name: Install Nextflow
         run: |

diff --git a/.github/workflows/myco.yml b/.github/workflows/myco.yml
@@ -11,7 +11,7 @@ jobs:
         uses: actions/checkout@v4
 
       - name: Clean up Disk space
-        uses: jlumbroso/free-disk-space
+        uses: jlumbroso/free-disk-space@main
 
       - name: Install Nextflow
         run: |

diff --git a/.github/workflows/phylogenetic_workflow.yml b/.github/workflows/phylogenetic_workflow.yml
@@ -11,7 +11,7 @@ jobs:
         uses: actions/checkout@v4
 
       - name: Clean up Disk space
-        uses: jlumbroso/free-disk-space
+        uses: jlumbroso/free-disk-space@main
 
       - name: Install Nextflow
         run: |

diff --git a/.github/workflows/prokka.yml b/.github/workflows/prokka.yml
@@ -11,7 +11,7 @@ jobs:
         uses: actions/checkout@v4
 
       - name: Clean up Disk space
-        uses: jlumbroso/free-disk-space
+        uses: jlumbroso/free-disk-space@main
 
       - name: Install Nextflow
         run: |

diff --git a/.github/workflows/prokka_roary.yml b/.github/workflows/prokka_roary.yml
@@ -11,7 +11,7 @@ jobs:
         uses: actions/checkout@v4
 
       - name: Clean up Disk space
-        uses: jlumbroso/free-disk-space
+        uses: jlumbroso/free-disk-space@main
 
       - name: Install Nextflow
         run: |

diff --git a/.github/workflows/roary.yml b/.github/workflows/roary.yml
@@ -11,7 +11,7 @@ jobs:
         uses: actions/checkout@v4
 
       - name: Clean up Disk space
-        uses: jlumbroso/free-disk-space
+        uses: jlumbroso/free-disk-space@main
 
       - name: Install Nextflow
         run: |

diff --git a/.github/workflows/run_workflow.yml b/.github/workflows/run_workflow.yml
@@ -11,7 +11,7 @@ jobs:
         uses: actions/checkout@v4
 
       - name: Clean up Disk space
-        uses: jlumbroso/free-disk-space
+        uses: jlumbroso/free-disk-space@main
 
       - name: Install Nextflow
         run: |

diff --git a/.github/workflows/salmonella.yml b/.github/workflows/salmonella.yml
@@ -11,7 +11,7 @@ jobs:
         uses: actions/checkout@v4
 
       - name: Clean up Disk space
-        uses: jlumbroso/free-disk-space
+        uses: jlumbroso/free-disk-space@main
 
       - name: Install Nextflow
         run: |

diff --git a/.github/workflows/sample_sheet.yml b/.github/workflows/sample_sheet.yml
@@ -11,7 +11,7 @@ jobs:
         uses: actions/checkout@v4
 
       - name: Clean up Disk space
-        uses: jlumbroso/free-disk-space
+        uses: jlumbroso/free-disk-space@main
 
       - name: Install Nextflow
         run: |

diff --git a/.github/workflows/strepA.yml b/.github/workflows/strepA.yml
@@ -11,7 +11,7 @@ jobs:
         uses: actions/checkout@v4
 
       - name: Clean up Disk space
-        uses: jlumbroso/free-disk-space
+        uses: jlumbroso/free-disk-space@main
 
       - name: Install Nextflow
         run: |

diff --git a/.github/workflows/strep_pneumo.yml b/.github/workflows/strep_pneumo.yml
@@ -11,7 +11,7 @@ jobs:
         uses: actions/checkout@v4
 
       - name: Clean up Disk space
-        uses: jlumbroso/free-disk-space
+        uses: jlumbroso/free-disk-space@main
 
       - name: Install Nextflow
         run: |

diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
@@ -11,7 +11,7 @@ jobs:
         uses: actions/checkout@v4
 
       - name: Clean up Disk space
-        uses: jlumbroso/free-disk-space
+        uses: jlumbroso/free-disk-space@main
 
       - name: Install Nextflow
         run: |

diff --git a/.github/workflows/test0.yml b/.github/workflows/test0.yml
@@ -11,7 +11,7 @@ jobs:
         uses: actions/checkout@v4
 
       - name: Clean up Disk space
-        uses: jlumbroso/free-disk-space
+        uses: jlumbroso/free-disk-space@main
 
       - name: Install Nextflow
         run: |

diff --git a/.github/workflows/test1.yml b/.github/workflows/test1.yml
@@ -11,7 +11,7 @@ jobs:
         uses: actions/checkout@v4
 
       - name: Clean up Disk space
-        uses: jlumbroso/free-disk-space
+        uses: jlumbroso/free-disk-space@main
 
       - name: Install Nextflow
         run: |

diff --git a/.github/workflows/test2.yml b/.github/workflows/test2.yml
@@ -11,7 +11,7 @@ jobs:
         uses: actions/checkout@v4
 
       - name: Clean up Disk space
-        uses: jlumbroso/free-disk-space
+        uses: jlumbroso/free-disk-space@main
 
       - name: Install Nextflow
         run: |

diff --git a/.github/workflows/test3.yml b/.github/workflows/test3.yml
@@ -11,7 +11,7 @@ jobs:
         uses: actions/checkout@v4
 
       - name: Clean up Disk space
-        uses: jlumbroso/free-disk-space
+        uses: jlumbroso/free-disk-space@main
 
       - name: Install Nextflow
         run: |

diff --git a/.github/workflows/test4.yml b/.github/workflows/test4.yml
@@ -11,7 +11,7 @@ jobs:
         uses: actions/checkout@v4
 
       - name: Clean up Disk space
-        uses: jlumbroso/free-disk-space
+        uses: jlumbroso/free-disk-space@main
 
       - name: Install Nextflow
         run: |

diff --git a/.github/workflows/test5.yml b/.github/workflows/test5.yml
@@ -11,7 +11,7 @@ jobs:
         uses: actions/checkout@v4
 
       - name: Clean up Disk space
-        uses: jlumbroso/free-disk-space
+        uses: jlumbroso/free-disk-space@main
 
       - name: Install Nextflow
         run: |

diff --git a/.github/workflows/test6.yml b/.github/workflows/test6.yml
@@ -11,7 +11,7 @@ jobs:
         uses: actions/checkout@v4
 
       - name: Clean up Disk space
-        uses: jlumbroso/free-disk-space
+        uses: jlumbroso/free-disk-space@main
 
       - name: Install Nextflow
         run: |

diff --git a/.github/workflows/test7.yml b/.github/workflows/test7.yml
@@ -11,7 +11,7 @@ jobs:
         uses: actions/checkout@v4
 
       - name: Clean up Disk space
-        uses: jlumbroso/free-disk-space
+        uses: jlumbroso/free-disk-space@main
 
       - name: Install Nextflow
         run: |

diff --git a/.github/workflows/test8.yml b/.github/workflows/test8.yml
@@ -11,7 +11,7 @@ jobs:
         uses: actions/checkout@v4
 
       - name: Clean up Disk space
-        uses: jlumbroso/free-disk-space
+        uses: jlumbroso/free-disk-space@main
 
       - name: Install Nextflow
         run: |

diff --git a/.github/workflows/vibrio.yml b/.github/workflows/vibrio.yml
@@ -11,7 +11,7 @@ jobs:
         uses: actions/checkout@v4
 
       - name: Clean up Disk space
-        uses: jlumbroso/free-disk-space
+        uses: jlumbroso/free-disk-space@main
 
       - name: Install Nextflow
         run: |

diff --git a/.github/workflows/withoutfastani.yml b/.github/workflows/withoutfastani.yml
@@ -11,7 +11,7 @@ jobs:
         uses: actions/checkout@v4
 
       - name: Clean up Disk space
-        uses: jlumbroso/free-disk-space
+        uses: jlumbroso/free-disk-space@main
 
       - name: Install Nextflow
         run: |