FSL - link to ghcr #69
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| --- | |
| name: main | |
| on: | |
| push: | |
| pull_request: | |
| workflow_dispatch: | |
| # schedule: | |
| # - cron: "0 6 * * *" | |
| defaults: | |
| run: | |
| shell: bash | |
| jobs: | |
| containers: | |
| runs-on: ubuntu-22.04 | |
| strategy: | |
| matrix: | |
| package: ["FSL", "Freesurfer"] | |
| steps: | |
| - name: checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 2 | |
| - name: skip if unchanged | |
| run: | | |
| set -euxo pipefail | |
| SKIP=0 | |
| if ! git diff --name-only HEAD^ | grep "software/${{ matrix.package }}" | grep -v README > /dev/null | |
| then | |
| SKIP=1 | |
| fi | |
| echo "SKIP=$SKIP" >> "$GITHUB_ENV" | |
| - name: free disk space | |
| if: env.SKIP == '0' | |
| run: | | |
| set -euxo pipefail | |
| df -h | |
| sudo rm -rf /usr/share/dotnet | |
| sudo rm -rf /usr/local/lib/android | |
| sudo rm -rf /usr/local/share/boost | |
| sudo rm -rf /opt/ghc | |
| sudo rm -rf "$AGENT_TOOLSDIRECTORY" | |
| df -h | |
| - name: build image | |
| if: env.SKIP == '0' | |
| run: | | |
| set -euxo pipefail | |
| package="${{ matrix.package }}" | |
| cd "software/$package" | |
| img="ghcr.io/smi/${package,,}" | |
| tag="$(grep _VERSION= Dockerfile | cut -d'"' -f2)" | |
| docker build . --tag "$img:$tag" | |
| docker tag "$img:$tag" "$img:latest" | |
| echo "img=$img" >> "$GITHUB_ENV" | |
| echo "tag=$tag" >> "$GITHUB_ENV" | |
| - name: run trivy | |
| if: env.SKIP == '0' | |
| uses: aquasecurity/trivy-action@master | |
| with: | |
| image-ref: "${{ env.img }}:${{ env.tag }}" | |
| format: 'github' | |
| output: 'dependency-results.sbom.json' | |
| github-pat: "${{ secrets.GITHUB_TOKEN }}" | |
| severity: 'MEDIUM,CRITICAL,HIGH' | |
| scanners: "vuln" | |
| - name: upload trivy report | |
| if: env.SKIP == '0' && !cancelled() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: 'trivy-sbom-report-${{ matrix.package }}' | |
| path: 'dependency-results.sbom.json' | |
| - name: push image | |
| if: env.SKIP == '0' && github.ref == 'refs/heads/main' | |
| run: | | |
| set -euxo pipefail | |
| echo "${{ secrets.GITHUB_TOKEN }}" | docker login ghcr.io -u $ --password-stdin | |
| docker push "$img:$tag" | |
| docker push "$img:latest" |