MedCat - added run_on_gpu_cluster.sh #44

	---
	name: main

	on:
	push:
	pull_request:
	workflow_dispatch:
	# schedule:
	# - cron: "0 6 * * *"

	defaults:
	run:
	shell: bash

	jobs:
	containers:
	runs-on: ubuntu-22.04
	strategy:
	matrix:
	package: ["FSL", "Freesurfer"]
	steps:
	- name: checkout
	uses: actions/checkout@v4
	with:
	fetch-depth: 2
	- name: skip if unchanged
	run: \|
	set -euxo pipefail
	SKIP=0
	if ! git diff --name-only HEAD^ \| grep "software/${{ matrix.package }}" \| grep -v README > /dev/null
	then
	SKIP=1
	fi
	echo "SKIP=$SKIP" >> "$GITHUB_ENV"
	- name: free disk space
	if: env.SKIP == '0'
	run: \|
	set -euxo pipefail
	df -h
	sudo rm -rf /usr/share/dotnet
	sudo rm -rf /usr/local/lib/android
	sudo rm -rf /usr/local/share/boost
	sudo rm -rf /opt/ghc
	sudo rm -rf "$AGENT_TOOLSDIRECTORY"
	sudo docker image prune --all --force
	df -h
	- name: build image
	if: env.SKIP == '0'
	run: \|
	set -euxo pipefail
	package="${{ matrix.package }}"
	cd "software/$package"
	img="ghcr.io/smi/${package,,}"
	tag="$(grep _VERSION= Dockerfile \| cut -d'"' -f2)"
	docker build . --tag "$img:$tag"
	docker tag "$img:$tag" "$img:latest"
	echo "img=$img" >> "$GITHUB_ENV"
	echo "tag=$tag" >> "$GITHUB_ENV"
	- name: push image
	if: env.SKIP == '0' && github.ref == 'refs/heads/main'
	run: \|
	set -euxo pipefail
	echo "${{ secrets.GITHUB_TOKEN }}" \| docker login ghcr.io -u $ --password-stdin
	docker push "$img:$tag"
	docker push "$img:latest"

Provide feedback