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Initial FSL/Freesurfer images #27

Initial FSL/Freesurfer images

Initial FSL/Freesurfer images #27

Workflow file for this run

---
name: main
on:
push:
pull_request:
workflow_dispatch:
# schedule:
# - cron: "0 6 * * *"
defaults:
run:
shell: bash
jobs:
containers:
runs-on: ubuntu-22.04
strategy:
matrix:
package: ["FSL", "Freesurfer"]
steps:
- name: checkout
uses: actions/checkout@v4
- name: free disk space
run: |
set -euxo pipefail
df -h
sudo rm -rf /usr/share/dotnet
sudo rm -rf /usr/local/lib/android
sudo rm -rf /usr/local/share/boost
sudo rm -rf /opt/ghc
sudo rm -rf "$AGENT_TOOLSDIRECTORY"
sudo docker image prune --all --force
df -h
- name: build image
run: |
set -euxo pipefail
cd "software/${{ matrix.package }}"
# img="ghcr.io/smi/fsl:$(grep FSL_VERSION= Dockerfile | cut -d'"' -f2)"
# docker build . --tag "$img"
# echo "${{ secrets.GITHUB_TOKEN }}" | docker login ghcr.io -u $ --password-stdin
# docker push "$img"