Initial FSL/Freesurfer images #23

	---

	name: main

	on:
	push:
	pull_request:
	workflow_dispatch:
	# schedule:
	# - cron: "0 6 * * *"

	defaults:
	run:
	shell: bash

	jobs:
	freesurfer:
	runs-on: ubuntu-22.04
	if: false # temp
	steps:
	- name: checkout
	uses: actions/checkout@v4
	- name: build image
	run: \|
	set -euxo pipefail
	# Debug
	df -h
	sudo rm -rf /usr/share/dotnet
	sudo rm -rf /usr/local/share/boost
	sudo rm -rf /opt/ghc
	sudo rm -rf "$AGENT_TOOLSDIRECTORY"
	df -h
	cd software/Freesurfer
	docker build .
	fsl:
	runs-on: ubuntu-22.04
	steps:
	- name: checkout
	uses: actions/checkout@v4
	- name: build image
	run: \|
	set -euxo pipefail
	# Debug
	df -h
	sudo rm -rf /usr/share/dotnet
	sudo rm -rf /usr/local/share/boost
	sudo rm -rf /opt/ghc
	sudo rm -rf "$AGENT_TOOLSDIRECTORY"
	df -h
	cd software/FSL
	img="ghcr.io/smi/fsl:$(grep FSL_VERSION= Dockerfile \| cut -d'"' -f2)"
	docker build . --tag "$img"
	echo "${{ secrets.GITHUB_TOKEN }}" \| docker login ghcr.io -u $ --password-stdin
	docker push "$img"

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