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@JaneliaSciComp

Howard Hughes Medical Institute

GitHub organization maintained by Scientific Computing Software at HHMI's Janelia Research Campus for use by HHMI staff and external collaborators.

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  1. bigstream bigstream Public

    Tools for distributed alignment of massive images

    Jupyter Notebook 80 21

  2. NIDAQ.jl NIDAQ.jl Public

    National Instruments Data Acquisition Interface

    Julia 47 16

  3. JRCLUST JRCLUST Public

    JRCLUST

    MATLAB 34 22

  4. multifish multifish Public

    EASI-FISH analysis pipeline for spatial transcriptomics

    Jupyter Notebook 33 13

  5. xarray-multiscale xarray-multiscale Public

    scalable multiscale image pyramids in python

    Python 26 3

  6. SharkViewer SharkViewer Public

    SharkViewer is a web-based viewer for SWC neuron files. It is written entirely in JavaScript using Three.js.

    JavaScript 24 11

Repositories

Showing 10 of 270 repositories
  • EM_recon_pipeline Public

    Pipeline scripts and tools for reconstructing Electron Microscopy volumes.

    JaneliaSciComp/EM_recon_pipeline’s past year of commit activity
    Python 3 BSD-3-Clause 3 0 3 Updated Feb 19, 2025
  • FunkeAnnotation Public

    Small tool to annotate images

    JaneliaSciComp/FunkeAnnotation’s past year of commit activity
    Java 0 0 0 0 Updated Feb 18, 2025
  • ossi-website Public

    Website showcasing Janelia Open Science Software Intiative (OSSI) supported software projects and other software developed at Janelia.

    JaneliaSciComp/ossi-website’s past year of commit activity
    Astro 1 BSD-3-Clause 17 17 3 Updated Feb 18, 2025
  • hortacloud-website Public

    Documentation website for HortaCloud

    JaneliaSciComp/hortacloud-website’s past year of commit activity
    HTML 2 BSD-3-Clause 0 0 2 Updated Feb 18, 2025
  • workday-utilities Public

    Utilities for getting data from Workday

    JaneliaSciComp/workday-utilities’s past year of commit activity
    Python 1 BSD-3-Clause 0 0 0 Updated Feb 18, 2025
  • storage-utilities Public

    Utilities for storage monitoring

    JaneliaSciComp/storage-utilities’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Feb 18, 2025
  • dis-utilities Public

    Utilities for Data and Information Services

    JaneliaSciComp/dis-utilities’s past year of commit activity
    JavaScript 1 BSD-3-Clause 1 13 1 Updated Feb 18, 2025
  • aitch Public

    local scheduler for heterogenous jobs

    JaneliaSciComp/aitch’s past year of commit activity
    Rust 3 0 0 0 Updated Feb 18, 2025
  • workstation Public

    Janelia Workstation

    JaneliaSciComp/workstation’s past year of commit activity
    Java 23 11 0 13 Updated Feb 18, 2025
  • fileglancer Public

    Browse, share, and publish data in the Janelia file system

    JaneliaSciComp/fileglancer’s past year of commit activity
    Python 0 BSD-3-Clause 0 3 1 Updated Feb 18, 2025
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