Added additional fields that have been added to the FHIR Converter an…

…d message parser (#232)

scripts/Synapse/updateECRDataStore.ipynb

@@ -279,7 +279,19 @@
     "    \"specimen_type_20\": [\"string\", True],\n",
     "    \"performing_lab_20\": [\"string\", True],\n",
     "    \"specimen_collection_date_20\": [\"timestamp\", True],\n",
-    "    \"result_date_20\": [\"timestamp\", True]\n",
+    "    \"result_date_20\": [\"timestamp\", True],\n",
+    "    \"birth_sex\": [\"string\", True],\n",
+    "    \"gender_identity\": [\"string\", True],\n",
+    "    \"homelessness_status\": [\"string\", True],\n",
+    "    \"disabilities\": [\"string\", True],\n",
+    "    \"tribal_affiliation\": [\"string\", True],\n",
+    "    \"tribal_enrollment_status\": [\"string\", True],\n",
+    "    \"current_job_title\": [\"string\", True],\n",
+    "    \"current_job_industry\": [\"string\", True],\n",
+    "    \"usual_occupation\": [\"string\", True],\n",
+    "    \"usual_industry\": [\"string\", True],\n",
+    "    \"preferred_language\": [\"string\", True],\n",
+    "    \"pregnancy_status\": [\"string\", True]\n",
     "  }\n",
     "\n",
     "def get_schemas(schema: dict) -> Tuple[StructType, dict]:\n",

scripts/assets/dummy_delta_lake.ipynb

@@ -247,6 +247,18 @@
     "    \"performing_lab_20\",\n",
     "    \"specimen_collection_date_20\",\n",
     "    \"result_date_20\",\n",
+    "    \"birth_sex\",\n",
+    "    \"gender_identity\",\n",
+    "    \"homelessness_status\",\n",
+    "    \"disabilities\",\n",
+    "    \"tribal_affiliation\",\n",
+    "    \"tribal_enrollment_status\",\n",
+    "    \"current_job_title\",\n",
+    "    \"current_job_industry\",\n",
+    "    \"usual_occupation\",\n",
+    "    \"usual_industry\",\n",
+    "    \"preferred_language\",\n",
+    "    \"pregnancy_status\"\n",
     "]\n",
     "\n",
     "schema_cols = [StructField(f, StringType(), True) for f in schema_fields]\n",