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Format code alntmscore does not exist #427

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fatima1492 opened this issue Feb 19, 2025 · 4 comments
Open

Format code alntmscore does not exist #427

fatima1492 opened this issue Feb 19, 2025 · 4 comments

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@fatima1492
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fatima1492 commented Feb 19, 2025

I am trying to use the conda installed version of Foldseek
the command I use
foldseek easy-search example/A0A3B6ARS5_630_677_698_824_845_894.pdb example/ result.m8 tmp --alignment-type 1 --format-output "query,target,qaln,taln,alntmscore"
The error I am facing
Format code alntmscore does not exist

Apart from alntmscore, qtmscore, ttmscore , u and t, all other features seem to work.
How to get a tm score from here.

The output I get without the alntmscore parameter is attached.

Image
@milot-mirdita
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What version does calling foldseek version report?

@fatima1492
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What version does calling foldseek version report?

foldseek version
1.3c64211

@milot-mirdita
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That version is really old. Please rebuild your conda environment from scratch. It should install Foldseek release 10

@fatima1492
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fatima1492 commented Feb 19, 2025

rebuild your conda environment from scratch.

Thank you, it worked!

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