From d57039eed6a5606e54ff08b47c156d9d581d86d4 Mon Sep 17 00:00:00 2001 From: "Matthew W. Thompson" Date: Mon, 6 Jan 2025 15:27:06 -0600 Subject: [PATCH] Try always using `markup: markdown` --- .github/workflows/hugo.yml | 2 +- .../community/news/general/benchmark-small-molecules/index.md | 2 +- .../news/general/introducing-openforcefield-1.0/index.md | 2 +- .../news/general/openforcefield-toolkit-0.2-release.md | 2 +- .../news/general/openforcefield-toolkit-0.5-release.md | 2 +- content/community/news/general/rdkit-support-is-coming.md | 2 +- content/community/news/general/seeking-nih-funding/index.md | 2 +- content/community/news/general/webinar-daga-sep2019.md | 2 +- content/community/news/general/webinar-gapsys-aug2019.md | 2 +- content/community/news/general/webinar-hoffman-sep2019.md | 2 +- content/community/news/general/webinar-kraemer-dec2019.md | 2 +- content/community/news/general/webinar-stern-may2019.md | 2 +- content/community/news/general/webinar-tian-sep2019.md | 2 +- content/community/news/general/webinar-wang-oct2019.md | 2 +- content/manual/_index.md | 3 +-- 15 files changed, 15 insertions(+), 16 deletions(-) diff --git a/.github/workflows/hugo.yml b/.github/workflows/hugo.yml index a7515c242..1f98fbab7 100644 --- a/.github/workflows/hugo.yml +++ b/.github/workflows/hugo.yml @@ -34,7 +34,7 @@ jobs: build: runs-on: ubuntu-latest env: - HUGO_VERSION: 0.108.0 + HUGO_VERSION: 0.140.0 steps: - name: Install Hugo CLI run: | diff --git a/content/community/news/general/benchmark-small-molecules/index.md b/content/community/news/general/benchmark-small-molecules/index.md index 9c8c8adba..732449891 100644 --- a/content/community/news/general/benchmark-small-molecules/index.md +++ b/content/community/news/general/benchmark-small-molecules/index.md @@ -8,7 +8,7 @@ draft: false description: 'Force Field benchmark on small molecule energies and geometries.' weight: 10 author: "David Hahn" -markup: mmark # mmark is necessary for LaTeX to work properly +markup: markdown thumb: benchmark-small-molecules.png --- diff --git a/content/community/news/general/introducing-openforcefield-1.0/index.md b/content/community/news/general/introducing-openforcefield-1.0/index.md index f48916c25..93bb25e9a 100755 --- a/content/community/news/general/introducing-openforcefield-1.0/index.md +++ b/content/community/news/general/introducing-openforcefield-1.0/index.md @@ -8,7 +8,7 @@ draft: false description: 'At the end of our first year, the Open Force Field Consortium releases its first optimized force field: the Open Force Field 1.0 (codename "Parsley") small molecule force field' weight: 10 author: "David Mobley, Yudong Qiu, Simon Boothroyd, Lee-Ping Wang, and John Chodera" -markup: mmark # mmark is necessary for LaTeX to work properly +markup: markdown thumb: "noun_parsley.svg" --- diff --git a/content/community/news/general/openforcefield-toolkit-0.2-release.md b/content/community/news/general/openforcefield-toolkit-0.2-release.md index 179b665d2..e45818855 100755 --- a/content/community/news/general/openforcefield-toolkit-0.2-release.md +++ b/content/community/news/general/openforcefield-toolkit-0.2-release.md @@ -5,7 +5,7 @@ tags: ["news","general","OpenFF Toolkit", "cheminformatics","SMIRNOFF", "softwar categories: ["news"] draft: false description: "Release of major new toolkit version, with open-source cheminformatics support." -markup: mmark +markup: markdown weight: 10 author: "Jeff Wagner" thumb: "rdkit-logo.jpg" diff --git a/content/community/news/general/openforcefield-toolkit-0.5-release.md b/content/community/news/general/openforcefield-toolkit-0.5-release.md index 23dfcfc12..f4b061d9f 100755 --- a/content/community/news/general/openforcefield-toolkit-0.5-release.md +++ b/content/community/news/general/openforcefield-toolkit-0.5-release.md @@ -5,7 +5,7 @@ tags: ["news", "general", "OpenFF Toolkit", "GBSA", "SMIRNOFF", "cheminformatics categories: ["news"] draft: false description: "Major OFF Toolkit milestone, adding support for implicit solvation." -markup: mmark +markup: markdown weight: 10 author: "Jeff Wagner" thumb: "openff-toolkit-logo.jpg" diff --git a/content/community/news/general/rdkit-support-is-coming.md b/content/community/news/general/rdkit-support-is-coming.md index ac8ffdd57..5aa30e6ba 100755 --- a/content/community/news/general/rdkit-support-is-coming.md +++ b/content/community/news/general/rdkit-support-is-coming.md @@ -5,7 +5,7 @@ tags: ["news", "general", "OpenFF Toolkit", "cheminformatics", "RDKit", "OpenEye categories: ["news"] draft: false description: "A rundown of coming changes and improvements in the openforcefield toolkit." -markup: mmark +markup: markdown weight: 10 author: "John Chodera" thumb: "openff-toolkit-logo.jpg" diff --git a/content/community/news/general/seeking-nih-funding/index.md b/content/community/news/general/seeking-nih-funding/index.md index 831c2b080..b438566bc 100755 --- a/content/community/news/general/seeking-nih-funding/index.md +++ b/content/community/news/general/seeking-nih-funding/index.md @@ -5,7 +5,7 @@ tags: ["news","general","Open Force Field Initiative", "NIH", "funding"] categories: ["news"] draft: false description: "The Open Force Field Initiative has applied for NIH R&D funding to produce modern toolkits and high-quality biomolecular force fields to model complex heterogeneous biomolecular systems" -markup: mmark +markup: markdown weight: 10 author: "John Chodera" thumb: "openff-nih-funding.png" diff --git a/content/community/news/general/webinar-daga-sep2019.md b/content/community/news/general/webinar-daga-sep2019.md index 604000265..567a8f4fb 100755 --- a/content/community/news/general/webinar-daga-sep2019.md +++ b/content/community/news/general/webinar-daga-sep2019.md @@ -5,7 +5,7 @@ tags: ["news","general", "Pankaj R. Daga", "webinar","data curation", "AI", "dru categories: ["news"] draft: false description: "Pankaj R. Daga will give a talk at UC Irvine on Sep 13 at 11 am (PT) about importance of data curation in the age of AI" -markup: mark +markup: markdown weight: 10 author: "Karmen Condic-Jurkic" thumb: "webinar-daga-sep2019.jpg" diff --git a/content/community/news/general/webinar-gapsys-aug2019.md b/content/community/news/general/webinar-gapsys-aug2019.md index a55ef4da1..63c53bf33 100755 --- a/content/community/news/general/webinar-gapsys-aug2019.md +++ b/content/community/news/general/webinar-gapsys-aug2019.md @@ -5,7 +5,7 @@ tags: ["news", "general", "Vytautas Gapsys", "webinar","benchmarking", "binding categories: ["news"] draft: false description: "Vytautas Gapsys will give a talk at UC Irvine on Aug 21 at 11 am (PT) on his work on binding free energy calculations." -markup: mmark +markup: markdown weight: 10 author: "Karmen Condic-Jurkic" thumb: "webinar-gapsys-aug2019.png" diff --git a/content/community/news/general/webinar-hoffman-sep2019.md b/content/community/news/general/webinar-hoffman-sep2019.md index eab29e6df..52a17056d 100755 --- a/content/community/news/general/webinar-hoffman-sep2019.md +++ b/content/community/news/general/webinar-hoffman-sep2019.md @@ -5,7 +5,7 @@ tags: ["news", "general", "Falk Hoffmann", "CHARMM","AMBER", "force field", "NMR categories: ["news"] draft: false description: "Falk Hoffmann will give a webinar on Sep 20 at 11 am (EDT) about his recent study on methyl group dynamics in amino acid side-chains using MD simulations and NMR relaxation rates" -markup: mark +markup: markdown weight: 10 author: "Karmen Condic-Jurkic" thumb: "webinar-hoffman-sep2019.png" diff --git a/content/community/news/general/webinar-kraemer-dec2019.md b/content/community/news/general/webinar-kraemer-dec2019.md index efd752759..45a768a35 100755 --- a/content/community/news/general/webinar-kraemer-dec2019.md +++ b/content/community/news/general/webinar-kraemer-dec2019.md @@ -5,7 +5,7 @@ tags: ["news", "general", "Andreas Krämer", "webinar","CHARMM", "force field", categories: ["news"] draft: false description: "Andreas Krämer will talk about automated optimization of the CHARMM36 lipid force field on Dec 17 at 2 pm (ET)." -markup: mmark +markup: markdown weight: 10 author: "Karmen Condic-Jurkic" thumb: "webinar-kraemer-dec2019.png" diff --git a/content/community/news/general/webinar-stern-may2019.md b/content/community/news/general/webinar-stern-may2019.md index ef2ad21d5..0d0d81442 100755 --- a/content/community/news/general/webinar-stern-may2019.md +++ b/content/community/news/general/webinar-stern-may2019.md @@ -5,7 +5,7 @@ tags: ["news", "general", "Chaya Stern", "webinar","torsions", "fragmentation", categories: ["news"] draft: false description: "Chaya Stern gives a webinar about her work done on molecular fragmentation and torsion drive pipeline on Jun 4 at 11 am (EDT)" -markup: mmark +markup: markdown weight: 10 author: "Karmen Condic-Jurkic and Chaya Stern" thumb: "webinar-stern-may2019.jpg" diff --git a/content/community/news/general/webinar-tian-sep2019.md b/content/community/news/general/webinar-tian-sep2019.md index bc2fa0026..7f650514b 100755 --- a/content/community/news/general/webinar-tian-sep2019.md +++ b/content/community/news/general/webinar-tian-sep2019.md @@ -5,7 +5,7 @@ tags: ["news", "general", "Chuan Tian", "webinar","Amber", "force field", "ff19S categories: ["news"] draft: false description: "Chuan Tian presents his work on the latest version of Amber force field (ff19SB) at 1 pm (ET) on Sep 12" -markup: mark +markup: markdown weight: 10 author: "Karmen Condic-Jurkic" thumb: "webinar-tian-sep2019.jpg" diff --git a/content/community/news/general/webinar-wang-oct2019.md b/content/community/news/general/webinar-wang-oct2019.md index 062d25655..7e28fe116 100755 --- a/content/community/news/general/webinar-wang-oct2019.md +++ b/content/community/news/general/webinar-wang-oct2019.md @@ -5,7 +5,7 @@ tags: ["news", "general", "Yuanqing Wang", "webinar","Graph Nets", "machine lear categories: ["news"] draft: false description: "Yuanqing Wang (MSKCC) will talk about his ongoing work on applying machine learning techniques for fast prediction of atomic charges on Oct 14 at 1 pm (ET)." -markup: mmark +markup: markdown weight: 10 author: "Karmen Condic-Jurkic" thumb: "webinar-wang-oct2019.png" diff --git a/content/manual/_index.md b/content/manual/_index.md index f78a98c1c..03d6ab11f 100644 --- a/content/manual/_index.md +++ b/content/manual/_index.md @@ -318,8 +318,7 @@ Also it has its own header: - author: "David Mobley, Yudong Qiu, Simon Boothroyd, Lee-Ping Wang, and John Chodera"{{< br >}} *Authors of the item* -- markup: mmark # mmark is necessary for LaTeX to work properly{{< br >}} -*For use of markdown with LaTeX* +- markup: markdown - thumb: "5-The-Open-Force-Field-1.0-small-molecule-force-field,-our-first-optimized-force-field-(codename-_Parsley_).jpg"{{< br >}} *Thumb image used with the item, the images are in the same folder as the items*