From a918d523c62ba745848fc15898570521d6b630b2 Mon Sep 17 00:00:00 2001
From: John Huddleston <huddlej@gmail.com>
Date: Thu, 24 Oct 2024 11:53:39 -0700
Subject: [PATCH] Include original GISAID strain name in metadata

Adds the GISAID strain name to list of fields to fetch from fauna in and
parse from the raw sequences FASTA in the "upload" workflow. This change
will include these original names in the metadata in S3.
---
 profiles/upload.yaml | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/profiles/upload.yaml b/profiles/upload.yaml
index f62b767f..035edf67 100644
--- a/profiles/upload.yaml
+++ b/profiles/upload.yaml
@@ -21,6 +21,7 @@ fauna_fasta_fields:
   - submitting_lab
   - age
   - gender
+  - gisaid_strain
 fasta_fields:
   - strain
   - virus
@@ -38,6 +39,7 @@ fasta_fields:
   - submitting_lab
   - age
   - gender
+  - gisaid_strain
 prettify_fields:
   - region
   - country