Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Compare beta diversity between and within groups #149

Open
microsud opened this issue Oct 25, 2020 · 3 comments
Open

Compare beta diversity between and within groups #149

microsud opened this issue Oct 25, 2020 · 3 comments
Assignees
@microsud
Labels
Feature

Comments

@microsud
Copy link
Owner

Request for function that allows comparison of beta diversity (boxplots) between and within groups.
@microsud microsud self-assigned this Oct 25, 2020
@antagomir
Copy link
Collaborator

The microbiome::divergence function can already be used for this purpose, at least to some extent. We can develop it further, though. Some examples in the tutorial.

@microsud
Copy link
Owner Author

Yes I think the microbiome::divergence function can be wrapped for more intuitive and global comparison (compare_divergence/global_divergence) to get something as shown below. I got some request for this. IMO the appropriate place for this is microbiome pkg.

compare_beta

@antagomir
Copy link
Collaborator

Good to me. PRs are welcome, or we may implement it when time allows.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@microsud microsud

Labels
Feature
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@antagomir @microsud