diff --git a/tools/ci_build/build.py b/tools/ci_build/build.py
index aebac2c2b3b7f..a006360c62240 100644
--- a/tools/ci_build/build.py
+++ b/tools/ci_build/build.py
@@ -2607,7 +2607,7 @@ def main():
 
     print(args)
 
-    if args.build_wasm:
+    if args.build_wasm or args.use_webgpu:
         # No custom triplet for the wasm builds yet
         args.use_vcpkg = False
     elif args.minimal_build: