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jrc_mus-nacc-2 #28

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jonesa3 opened this issue Jun 21, 2024 · 9 comments
Open

jrc_mus-nacc-2 #28

jonesa3 opened this issue Jun 21, 2024 · 9 comments
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@davidackerman
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🎨 manual only small number of nuclei; no predictions needed

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@jonesa3
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jonesa3 commented Jun 21, 2024

No description provided.

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jonesa3 commented Jun 25, 2024

used s3 (64nm seemed too low for this dataset)

@jonesa3 jonesa3 assigned aemmav and unassigned jonesa3 Jun 25, 2024
@aemmav aemmav added the 🎨 manual only small number of nuclei; no predictions needed label Jul 2, 2024
@aemmav aemmav assigned jonesa3 and unassigned aemmav Jul 2, 2024
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aemmav commented Jul 2, 2024

@jonesa3 Let me know if there are any datasets marked "manual only" that you would like me to try training a model for, but I believe this one will be easier to do manually.

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jonesa3 commented Jul 2, 2024

thanks @aemmav ! manual seg was a good choice for this one

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jonesa3 commented Jul 2, 2024

proofread tif found here: /avetissiane/tiff_slices/jrc_mus-nacc-2/s3_amira_proofread.tif

@jonesa3 jonesa3 assigned yuriyzubov and unassigned jonesa3 Jul 2, 2024
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/avetissiane/tiff_slices/jrc_mus-nacc-2/s3_amira_proofread.zarr

@yuriyzubov yuriyzubov assigned rinva and unassigned yuriyzubov Jul 8, 2024
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jrc_mus-nacc-2.zarr/recon-2/labels/inference/segmentations/nuc

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rinva commented Jul 30, 2024

Image

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rinva commented Aug 27, 2024

DOI created
https://doi.org/10.25378/janelia.26513209 https://figshare.com/s/0a6189d20bce11051404

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rinva commented Sep 4, 2024

thumbnail created and in nrs
nrs/data/jrc_mus-nacc-2/thumbnail_nuc.jpg

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🎨 manual only small number of nuclei; no predictions needed
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@yuriyzubov @davidackerman @rinva @jonesa3 @aemmav