run_tests.yml

name: run_tests

on: [push, pull_request]

jobs:
  run_pytest:
    strategy:
      fail-fast: false
      matrix:
        os: [ubuntu-latest, macos-13, macos-latest, windows-latest]
    runs-on: ${{ matrix.os }}
    defaults:
      run:
        shell: bash -l {0}

    steps:
      - name: Checkout git repository 
        uses: actions/checkout@v4

      - name: Setup Miniforge
        uses: conda-incubator/setup-miniconda@v3
        with:
          miniforge-version: latest
          activate-environment: cedalion

      - name: Get Date
        id: get-date
        run: echo "today=$(/bin/date -u '+%Y%m%d')" >> $GITHUB_OUTPUT
        shell: bash
 
      - name: Cache Conda env
        uses: actions/cache@v4
        with:
          path: ${{ env.CONDA }}/envs
          key:
            conda-${{ runner.os }}--${{ runner.arch }}--${{
            steps.get-date.outputs.today }}-${{
            hashFiles('environment_dev.yml') }}-${{ env.CACHE_NUMBER }}
        env:
          # Increase this value to reset cache if environment_dev.yml has not changed
          CACHE_NUMBER: 0
        id: cache

      - name: Update environment
        run: conda env update -n cedalion -f environment_dev.yml
        if: steps.cache.outputs.cache-hit != 'true'

      - name: Install cedalion
        run: python -m pip install -e . --no-deps --force-reinstall

      - name: Install nirfaster
        run: bash install_nirfaster.sh CPU
        shell: bash

      - name: Running Tests
        run: python -m pytest --verbose