_pkgdown.yml

url: https://epidist.epinowcast.org/
template:
  package: enwtheme
  math-rendering: mathjax

development:
  mode: auto

navbar:
  structure:
    left: [faq, intro, reference, articles, news]
    right: [search, github, lightswitch]
  components:
    faq:
      text: FAQ
      href: articles/faq.html
    articles:
      text: Articles
      menu:
      - text: Advanced features with Ebola data
        href: articles/ebola.html
      - text: Approximate Bayesian inference
        href: articles/approx-inference.html
      - text: Guide to the statistical models implemented in epidist
        href: articles/model.html

authors:
  Adam Howes:
    href: "https://athowes.github.io/"
  Sam Abbott:
    href: "https://www.samabbott.co.uk/"

reference:
- title: Linelist data
  desc: Functions for preparing linelist data
  contents:
  - has_concept("linelist_data")
- title: Aggregate data
  desc: Functions for preparing aggregate data
  contents:
  - has_concept("aggregate_data")
- title: Model fitting
  desc: Functions for fitting delay distribution models using `brms`
  contents:
  - has_concept("fit")
- title: Naive model
  desc: Specific methods for the naive model
  contents:
  - has_concept("naive_model")
- title: Latent model
  desc: Specific methods for the latent model
  contents:
  - has_concept("latent_model")
- title: Marginal model
  desc: Specific methods for the marginal model
  contents:
  - has_concept("marginal_model")
- title: Postprocess
  desc: Functions for postprocessing model output
  contents:
  - has_concept("postprocess")
- title: Diagnostic functions
  contents:
  - has_concept("diagnostics")
- title: Assert validity of objects
  desc: Functions used to assert the validity of package objects
  contents:
  - has_concept("assert")
- title: Family
  desc: Functions related to specifying custom `brms` families
  contents:
  - has_concept("family")
- title: Formula
  desc: Functions related to specifying custom `brms` formula
  contents:
  - has_concept("formula")
- title: Transform data
  desc: Transform data using the formula and family information
  contents:
  - has_concept("transform_data")
- title: Prior distributions
  desc: Functions for specifying prior distributions
  contents:
  - has_concept("prior")
- title: Stan code
  desc: Functions for specifying custom Stan code to put into `brms`
  contents:
  - has_concept("stan")
- title: Generator model functions
  desc: Generator functions for creating family specific model utilities.
  contents:
  - has_concept("gen")
- title: Simulation
  desc: Tools for simulating datasets
  contents:
  - has_concept("simulate")
- title: Data
  desc: Data included with the package
  contents:
  - has_concept("data")
- title: Reexported functions
  contents:
  - reexports