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Unfortunately, I can't provide the code for the project that I had that recreated it. I haven't had a chance to recreate in a smaller project, but I believe it has something to do with subfolders. For example, running the plugin on scripts/dirA, which includes modules that require modules from the parent directory, scripts/.
I had this problem today when trying to recursively generate a dependency graph for my application.
From the command line, when in the src folder I used the command
dependo --format amd <img_path> .
And this fixed the issue.
dependo is great to see what files a given file depends on, but it doesn't go any levels deeper to show what files those files depend on, and so on.
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