API reference has disappeared from docs

[tom-andersson]

The API reference pages are still present, but the content has disappeared, for example: https://alan-turing-institute.github.io/deepsensor/reference/data/loader.html

The API reference should be generated automatically by the 'sphinx.ext.autodoc' extension from source code docstrings, but the latest GitHub Actions docs workflow run has these errors:

/home/runner/work/deepsensor/deepsensor/docs/getting-started/installation.md:43: WARNING: Unknown directive type: 'bash' [myst.directive_unknown]
WARNING: autodoc: failed to import module 'active_learning.acquisition_fns' from module 'deepsensor'; the following exception was raised:
No module named 'deepsensor.data'
WARNING: autodoc: failed to import module 'active_learning.algorithms' from module 'deepsensor'; the following exception was raised:
No module named 'deepsensor.data'
WARNING: autodoc: failed to import class 'data.loader.TaskLoader' from module 'deepsensor'; the following exception was raised:
No module named 'deepsensor.data'
WARNING: autodoc: failed to import module 'data.processor' from module 'deepsensor'; the following exception was raised:
No module named 'deepsensor.data'
WARNING: autodoc: failed to import module 'data.sources' from module 'deepsensor'; the following exception was raised:
No module named 'deepsensor.data'
WARNING: autodoc: failed to import module 'data.task' from module 'deepsensor'; the following exception was raised:
No module named 'deepsensor.data'
WARNING: autodoc: failed to import module 'data.utils' from module 'deepsensor'; the following exception was raised:
No module named 'deepsensor.data'
WARNING: autodoc: failed to import module 'model.convnp' from module 'deepsensor'; the following exception was raised:
No module named 'deepsensor.data'
WARNING: autodoc: failed to import module 'model.defaults' from module 'deepsensor'; the following exception was raised:
No module named 'deepsensor.data'
WARNING: autodoc: failed to import module 'model.model' from module 'deepsensor'; the following exception was raised:
No module named 'deepsensor.data'
WARNING: autodoc: failed to import module 'model.nps' from module 'deepsensor'; the following exception was raised:
No module named 'deepsensor.data'
WARNING: autodoc: failed to import module 'model.pred' from module 'deepsensor'; the following exception was raised:
No module named 'deepsensor.data'
WARNING: autodoc: failed to import module 'plot' from module 'deepsensor'; the following exception was raised:
No module named 'deepsensor.data'
WARNING: autodoc: failed to import module 'train.train' from module 'deepsensor'; the following exception was raised:
No module named 'deepsensor.data'

I locally ran jupyter-book build docs --all and the pages had correctly been generated. I have not synced in a while, so it's something to do with the repo and/or a recent change at HEAD.

@davidwilby perhaps you could take a look? Feel free to assign me if not.

[davidwilby]

This issue is now fixed. We're also now using an up to date version of jupyter-book - let me know if you see any other issues in the docs.