From 760874f6ea909afc3174492307c884536e5c990a Mon Sep 17 00:00:00 2001 From: Michaela Ziegler Date: Mon, 30 Oct 2023 14:50:13 +0100 Subject: [PATCH] remove VS CH ELM Lab Specimen Types #26 --- input/fsh/profiles/Specimen.fsh | 2 +- input/pagecontent/changelog.md | 2 + .../ValueSet-ch-elm-lab-specimen-types.json | 299 ------------------ 3 files changed, 3 insertions(+), 300 deletions(-) delete mode 100644 input/resources/ValueSet-ch-elm-lab-specimen-types.json diff --git a/input/fsh/profiles/Specimen.fsh b/input/fsh/profiles/Specimen.fsh index 4ef14e5..08a3e3f 100644 --- a/input/fsh/profiles/Specimen.fsh +++ b/input/fsh/profiles/Specimen.fsh @@ -6,9 +6,9 @@ Description: "This CH ELM base profile constrains the Specimen resource for the * . ^short = "CH Lab Specimen: Laboratory" * type 1.. // Req. EU LAB +* type ^short = "The mechanism to declare the collection material is described under 'Guidance - Laboratory Result'" * type.coding ^short = "If the collection material is not declared by leading code (Observation.code)" * type.coding only ChElmCoding -* type from ChElmLabSpecimenTypes (extensible) // 'required' not possible: No code provided, and a code is required from the value set 'CH ELM Lab Specimen Types' (http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-lab-specimen-types|0.1.0) * type.text ^short = "If the collection material is declared by leading code (Observation.code)" * type.text = "Material declared by leading code (Observation.code)" diff --git a/input/pagecontent/changelog.md b/input/pagecontent/changelog.md index 344b2e6..961dcf5 100644 --- a/input/pagecontent/changelog.md +++ b/input/pagecontent/changelog.md @@ -14,6 +14,8 @@ All significant changes to this FHIR implementation guide will be documented on * [#21](https://github.com/ahdis/ch-elm/issues/21): Usage of the IDN instead of the OASI for Patient.identifier Liechtenstein. * Add a computable way for the concept of leading code and in some cases necessary addition of additional codes to the leading code, see [Guidance - Laboratory Result](guidance.html#laboratory-result) * [#25](https://github.com/ahdis/ch-elm/issues/25): Renaming of the specimen-specific ValueSet 'CH ELM Lab Specimen Types: Chlamydia Trachomatis' to ValueSet 'CH ELM Results Geni Spec' + * [#26](https://github.com/ahdis/ch-elm/issues/26): Remove ValueSet 'CH ELM Lab Specimen Types'; now handled via the newly introduced mechanism + * Change the fixed value for Specimen.type.text to a more general version: 'Material declared by LOINC system axis' -> 'Material declared by leading code (Observation.code)' #### Fixed * [#9](https://github.com/ahdis/ch-elm/issues/9): Set minimum cardinality of Patient.gender to 1 (according to the logical model) diff --git a/input/resources/ValueSet-ch-elm-lab-specimen-types.json b/input/resources/ValueSet-ch-elm-lab-specimen-types.json deleted file mode 100644 index 8d7672e..0000000 --- a/input/resources/ValueSet-ch-elm-lab-specimen-types.json +++ /dev/null @@ -1,299 +0,0 @@ -{ - "resourceType": "ValueSet", - "id": "ch-elm-lab-specimen-types", - "url": "http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-lab-specimen-types", - "name": "ChElmLabSpecimenTypes", - "title": "CH ELM Lab Specimen Types", - "status": "active", - "experimental": false, - "description": "This CH ELM value set includes the codes for the laboratory specimen.", - "compose": { - "include": [ - { - "system": "http://snomed.info/sct", - "concept": [ - { - "code": "257261003", - "display": "Swab" - }, - { - "code": "123038009", - "display": "Specimen" - }, - { - "code": "258500001", - "display": "Nasopharyngeal swab" - }, - { - "code": "461911000124106", - "display": "Oropharyngeal swab" - }, - { - "code": "258529004", - "display": "Throat swab" - }, - { - "code": "258607008", - "display": "Bronchoalveolar lavage fluid" - }, - { - "code": "119339001", - "display": "Faeces specimen" - }, - { - "code": "119334006", - "display": "Sputum specimen" - }, - { - "code": "119297000", - "display": "Blood specimen" - }, - { - "code": "119342007", - "display": "Saliva specimen" - }, - { - "code": "447154002", - "display": "Specimen from nose" - }, - { - "code": "119371008", - "display": "Specimen from abscess" - }, - { - "code": "447955000", - "display": "Specimen from rectum" - }, - { - "code": "168139001", - "display": "Peritoneal fluid" - }, - { - "code": "119399004", - "display": "Specimen from eye" - }, - { - "code": "119401005", - "display": "Specimen from conjunctiva" - }, - { - "code": "258415003", - "display": "Biopsy specimen" - }, - { - "code": "119395005", - "display": "Specimen from uterine cervix" - }, - { - "code": "119344008", - "display": "Specimen from genital system" - }, - { - "code": "258450006", - "display": "Cerebrospinal fluid specimen" - }, - { - "code": "258589002", - "display": "Lymph node specimen" - }, - { - "code": "258426009", - "display": "Placental membrane tissue specimen" - }, - { - "code": "57711000052109", - "display": "Specimen obtained by puncture procedure" - }, - { - "code": "119347001", - "display": "Seminal fluid" - }, - { - "code": "119394009", - "display": "Specimen from vagina" - }, - { - "code": "119365002", - "display": "Specimen from wound" - }, - { - "code": "119393003", - "display": "Specimen from urethra" - }, - { - "code": "119364003", - "display": "Serum specimen" - }, - { - "code": "309051001", - "display": "Body fluid specimen" - }, - { - "code": "430304001", - "display": "Specimen from unspecified body site" - }, - { - "code": "309132009", - "display": "Prostate biopsy specimen" - }, - { - "code": "472904006", - "display": "Swab from abdomen" - }, - { - "code": "258527002", - "display": "Anal swab" - }, - { - "code": "445160003", - "display": "Swab of eye" - }, - { - "code": "119300005", - "display": "Specimen from blood product" - }, - { - "code": "119391001", - "display": "Specimen from bronchus" - }, - { - "code": "258454002", - "display": "Dialysis fluid specimen" - }, - { - "code": "122643008", - "display": "Tissue specimen from large intestine" - }, - { - "code": "119323008", - "display": "Pus specimen" - }, - { - "code": "119378002", - "display": "Endocardial specimen" - }, - { - "code": "119373006", - "display": "Amniotic fluid specimen" - }, - { - "code": "119341000", - "display": "Bile specimen" - }, - { - "code": "119332005", - "display": "Synovial fluid specimen" - }, - { - "code": "258508008", - "display": "Genital swab" - }, - { - "code": "119376003", - "display": "Tissue specimen" - }, - { - "code": "608969007", - "display": "Specimen from skin" - }, - { - "code": "119398007", - "display": "Specimen from brain" - }, - { - "code": "119303007", - "display": "Microbial isolate specimen" - }, - { - "code": "430268003", - "display": "Specimen from bone" - }, - { - "code": "445447003", - "display": "Specimen from trachea obtained by aspiration" - }, - { - "code": "399492000", - "display": "Tissue specimen from lung" - }, - { - "code": "258459007", - "display": "Gastric fluid sample" - }, - { - "code": "119359002", - "display": "Bone marrow specimen" - }, - { - "code": "122556008", - "display": "Cord blood specimen" - }, - { - "code": "309165001", - "display": "Ear sample" - }, - { - "code": "119343002", - "display": "Pancreatic fluid specimen" - }, - { - "code": "119361006", - "display": "Plasma specimen" - }, - { - "code": "122736005", - "display": "Tissue specimen from placenta" - }, - { - "code": "418564007", - "display": "Pleural fluid specimen" - }, - { - "code": "119386002", - "display": "Specimen from prostate" - }, - { - "code": "119295008", - "display": "Specimen obtained by aspiration" - }, - { - "code": "119389009", - "display": "Specimen from throat" - }, - { - "code": "119396006", - "display": "Specimen from endometrium" - }, - { - "code": "258465007", - "display": "Lacrimal fluid sample" - }, - { - "code": "119369008", - "display": "Specimen from ulcer" - }, - { - "code": "119324002", - "display": "Specimen of unknown material" - }, - { - "code": "258520000", - "display": "Vaginal swab" - }, - { - "code": "258580003", - "display": "Whole blood sample" - }, - { - "code": "258531008", - "display": "Wound swab" - }, - { - "code": "119368000", - "display": "Specimen from cyst" - } - ] - } - ] - } -} \ No newline at end of file