From 5cebee2419feaa14145a767e027ab110b47abb5c Mon Sep 17 00:00:00 2001 From: oliveregger Date: Tue, 21 Jan 2025 14:33:28 +0100 Subject: [PATCH] update valuesets 4 #132 --- ...pecification-to-results-completion-vs.json | 30 --- ...s-to-foph-patient-name-representation.json | 240 +++++++++-------- ...ch-elm-results-to-interpretation-code.json | 242 ++++++++++-------- ...ch-elm-results-to-observation-profile.json | 10 + ...-elm-expecting-organism-specification.json | 12 - ...ch-elm-results-laboratory-observation.json | 96 ++++--- 6 files changed, 347 insertions(+), 283 deletions(-) diff --git a/input/resources/ConceptMap-ch-elm-expecting-organism-specification-to-results-completion-vs.json b/input/resources/ConceptMap-ch-elm-expecting-organism-specification-to-results-completion-vs.json index 2f904a5..3be8afb 100644 --- a/input/resources/ConceptMap-ch-elm-expecting-organism-specification-to-results-completion-vs.json +++ b/input/resources/ConceptMap-ch-elm-expecting-organism-specification-to-results-completion-vs.json @@ -205,26 +205,6 @@ } ] }, - { - "code": "49614-1", - "display": "Campylobacter sp DNA [Identifier] in Specimen by NAA with probe detection", - "target": [ - { - "code": "http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-camp-org", - "equivalence": "relatedto" - } - ] - }, - { - "code": "4992-4", - "display": "Campylobacter sp rRNA [Presence] in Specimen by Probe", - "target": [ - { - "code": "http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-camp-org", - "equivalence": "relatedto" - } - ] - }, { "code": "50687-3", "display": "Plasmodium sp Ag [Presence] in Blood", @@ -415,16 +395,6 @@ } ] }, - { - "code": "71429-5", - "display": "Campylobacter sp DNA.diarrheagenic [Presence] in Stool by NAA with probe detection", - "target": [ - { - "code": "http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-results-camp-diar-org", - "equivalence": "relatedto" - } - ] - }, { "code": "74037-3", "display": "Transmissible spongiform encephalopathy [Identifier] in Brain by Light microscopy", diff --git a/input/resources/ConceptMap-ch-elm-results-to-foph-patient-name-representation.json b/input/resources/ConceptMap-ch-elm-results-to-foph-patient-name-representation.json index efdea0a..72292a2 100644 --- a/input/resources/ConceptMap-ch-elm-results-to-foph-patient-name-representation.json +++ b/input/resources/ConceptMap-ch-elm-results-to-foph-patient-name-representation.json @@ -165,36 +165,6 @@ } ] }, - { - "code": "101552-8", - "display": "Campylobacter coli DNA [Presence] in Stool by NAA with probe detection", - "target": [ - { - "code": "initials", - "equivalence": "relatedto" - } - ] - }, - { - "code": "101554-4", - "display": "Campylobacter jejuni DNA [Presence] in Stool by NAA with probe detection", - "target": [ - { - "code": "initials", - "equivalence": "relatedto" - } - ] - }, - { - "code": "101555-1", - "display": "Campylobacter upsaliensis DNA [Presence] in Stool by NAA with probe detection", - "target": [ - { - "code": "initials", - "equivalence": "relatedto" - } - ] - }, { "code": "101662-5", "display": "Abnormal Prion Protein [Presence] in Cerebral spinal fluid by RT-QuIC", @@ -375,6 +345,16 @@ } ] }, + { + "code": "11469-4", + "display": "Bacillus anthracis [Presence] in Specimen by Organism specific culture", + "target": [ + { + "code": "full-name", + "equivalence": "relatedto" + } + ] + }, { "code": "13954-3", "display": "Hepatitis B virus e Ag [Presence] in Serum or Plasma by Immunoassay", @@ -535,6 +515,16 @@ } ] }, + { + "code": "21262-1", + "display": "Escherichia coli shiga-like toxin [Presence] in Stool by Immunoassay", + "target": [ + { + "code": "full-name", + "equivalence": "relatedto" + } + ] + }, { "code": "21363-7", "display": "Legionella pneumophila DNA [Presence] in Specimen by NAA with probe detection", @@ -635,6 +625,16 @@ } ] }, + { + "code": "23024-3", + "display": "Coxiella burnetii DNA [Presence] in Specimen by NAA with probe detection", + "target": [ + { + "code": "full-name", + "equivalence": "relatedto" + } + ] + }, { "code": "23126-6", "display": "Francisella tularensis Ag [Presence] in Tissue by Immune stain", @@ -795,6 +795,26 @@ } ] }, + { + "code": "31314-8", + "display": "Coxiella burnetii phase 2 IgG Ab [Presence] in Serum", + "target": [ + { + "code": "full-name", + "equivalence": "relatedto" + } + ] + }, + { + "code": "31315-5", + "display": "Coxiella burnetii phase 2 IgM Ab [Presence] in Serum", + "target": [ + { + "code": "full-name", + "equivalence": "relatedto" + } + ] + }, { "code": "31616-6", "display": "Rubella virus IgM Ab [Presence] in Serum", @@ -1515,6 +1535,16 @@ } ] }, + { + "code": "49124-1", + "display": "Coxiella burnetii identified in Specimen by Sequencing", + "target": [ + { + "code": "full-name", + "equivalence": "relatedto" + } + ] + }, { "code": "49521-8", "display": "Influenza virus A H1 RNA [Presence] in Specimen by NAA with probe detection", @@ -1555,16 +1585,6 @@ } ] }, - { - "code": "49614-1", - "display": "Campylobacter sp DNA [Identifier] in Specimen by NAA with probe detection", - "target": [ - { - "code": "initials", - "equivalence": "relatedto" - } - ] - }, { "code": "49671-1", "display": "Neisseria meningitidis DNA [Presence] in Specimen by NAA with probe detection", @@ -1585,16 +1605,6 @@ } ] }, - { - "code": "4992-4", - "display": "Campylobacter sp rRNA [Presence] in Specimen by Probe", - "target": [ - { - "code": "initials", - "equivalence": "relatedto" - } - ] - }, { "code": "5007-0", "display": "Hepatitis B virus DNA [Presence] in Blood by NAA with probe detection", @@ -1715,6 +1725,16 @@ } ] }, + { + "code": "51939-7", + "display": "Escherichia coli shiga-like toxin 2 [Presence] in Stool by Immunoassay", + "target": [ + { + "code": "full-name", + "equivalence": "relatedto" + } + ] + }, { "code": "51940-5", "display": "Escherichia coli shiga-like toxin 1 [Presence] in Stool by Immunoassay", @@ -1845,6 +1865,16 @@ } ] }, + { + "code": "53946-0", + "display": "Escherichia coli shiga-like toxin identified in Specimen", + "target": [ + { + "code": "full-name", + "equivalence": "relatedto" + } + ] + }, { "code": "54091-4", "display": "Rubella virus RNA [Presence] in Specimen by NAA with probe detection", @@ -2005,6 +2035,16 @@ } ] }, + { + "code": "60261-5", + "display": "Coxiella burnetii DNA [Presence] in Serum or Plasma by NAA with probe detection", + "target": [ + { + "code": "full-name", + "equivalence": "relatedto" + } + ] + }, { "code": "60274-8", "display": "Rubella virus RNA [Presence] in Serum or Plasma by NAA with probe detection", @@ -2055,16 +2095,6 @@ } ] }, - { - "code": "61368-7", - "display": "Campylobacter jejuni DNA [Presence] in Specimen by NAA with probe detection", - "target": [ - { - "code": "initials", - "equivalence": "relatedto" - } - ] - }, { "code": "61369-5", "display": "Listeria monocytogenes DNA [Presence] in Specimen by NAA with probe detection", @@ -2095,36 +2125,6 @@ } ] }, - { - "code": "6329-7", - "display": "Campylobacter coli rRNA [Presence] in Specimen by Probe", - "target": [ - { - "code": "initials", - "equivalence": "relatedto" - } - ] - }, - { - "code": "6333-9", - "display": "Campylobacter jejuni rRNA [Presence] in Specimen by Probe", - "target": [ - { - "code": "initials", - "equivalence": "relatedto" - } - ] - }, - { - "code": "6334-7", - "display": "Campylobacter lari rRNA [Presence] in Specimen by Probe", - "target": [ - { - "code": "initials", - "equivalence": "relatedto" - } - ] - }, { "code": "6349-5", "display": "Chlamydia trachomatis [Presence] in Specimen by Organism specific culture", @@ -2445,16 +2445,6 @@ } ] }, - { - "code": "71429-5", - "display": "Campylobacter sp DNA.diarrheagenic [Presence] in Stool by NAA with probe detection", - "target": [ - { - "code": "initials", - "equivalence": "relatedto" - } - ] - }, { "code": "71782-7", "display": "Yellow fever virus IgM Ab [Presence] in Cerebral spinal fluid by Immunoassay", @@ -2665,6 +2655,26 @@ } ] }, + { + "code": "79386-9", + "display": "Escherichia coli Stx1 toxin stx1 gene [Presence] in Stool by NAA with probe detection", + "target": [ + { + "code": "full-name", + "equivalence": "relatedto" + } + ] + }, + { + "code": "79387-7", + "display": "Escherichia coli Stx2 toxin stx2 gene [Presence] in Stool by NAA with probe detection", + "target": [ + { + "code": "full-name", + "equivalence": "relatedto" + } + ] + }, { "code": "7964-0", "display": "Measles virus RNA [Presence] in Nose by NAA with probe detection", @@ -2945,6 +2955,26 @@ } ] }, + { + "code": "88177-1", + "display": "Coxiella burnetii DNA [Presence] in Blood by NAA with probe detection", + "target": [ + { + "code": "full-name", + "equivalence": "relatedto" + } + ] + }, + { + "code": "88178-9", + "display": "Coxiella burnetii DNA [Presence] in Tissue by NAA with probe detection", + "target": [ + { + "code": "full-name", + "equivalence": "relatedto" + } + ] + }, { "code": "88192-0", "display": "Crimean-Congo hemorrhagic fever virus RNA [Presence] in Serum by NAA with probe detection", @@ -3515,6 +3545,16 @@ } ] }, + { + "code": "9711-3", + "display": "Coxiella burnetii phase 2 IgM Ab [Titer] in Serum", + "target": [ + { + "code": "full-name", + "equivalence": "relatedto" + } + ] + }, { "code": "97313-1", "display": "Salmonella sp DNA [Presence] in Stool by NAA with probe detection", diff --git a/input/resources/ConceptMap-ch-elm-results-to-interpretation-code.json b/input/resources/ConceptMap-ch-elm-results-to-interpretation-code.json index 62e0bf5..24aa836 100644 --- a/input/resources/ConceptMap-ch-elm-results-to-interpretation-code.json +++ b/input/resources/ConceptMap-ch-elm-results-to-interpretation-code.json @@ -165,36 +165,6 @@ } ] }, - { - "code": "101552-8", - "display": "Campylobacter coli DNA [Presence] in Stool by NAA with probe detection", - "target": [ - { - "code": "http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-interpretation-codes-pos", - "equivalence": "relatedto" - } - ] - }, - { - "code": "101554-4", - "display": "Campylobacter jejuni DNA [Presence] in Stool by NAA with probe detection", - "target": [ - { - "code": "http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-interpretation-codes-pos", - "equivalence": "relatedto" - } - ] - }, - { - "code": "101555-1", - "display": "Campylobacter upsaliensis DNA [Presence] in Stool by NAA with probe detection", - "target": [ - { - "code": "http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-interpretation-codes-pos", - "equivalence": "relatedto" - } - ] - }, { "code": "101662-5", "display": "Abnormal Prion Protein [Presence] in Cerebral spinal fluid by RT-QuIC", @@ -375,6 +345,16 @@ } ] }, + { + "code": "11469-4", + "display": "Bacillus anthracis [Presence] in Specimen by Organism specific culture", + "target": [ + { + "code": "http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-interpretation-codes-pos-neg", + "equivalence": "relatedto" + } + ] + }, { "code": "13954-3", "display": "Hepatitis B virus e Ag [Presence] in Serum or Plasma by Immunoassay", @@ -535,6 +515,16 @@ } ] }, + { + "code": "21262-1", + "display": "Escherichia coli shiga-like toxin [Presence] in Stool by Immunoassay", + "target": [ + { + "code": "http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-interpretation-codes-pos", + "equivalence": "relatedto" + } + ] + }, { "code": "21363-7", "display": "Legionella pneumophila DNA [Presence] in Specimen by NAA with probe detection", @@ -635,6 +625,16 @@ } ] }, + { + "code": "23024-3", + "display": "Coxiella burnetii DNA [Presence] in Specimen by NAA with probe detection", + "target": [ + { + "code": "http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-interpretation-codes-pos", + "equivalence": "relatedto" + } + ] + }, { "code": "23126-6", "display": "Francisella tularensis Ag [Presence] in Tissue by Immune stain", @@ -795,6 +795,26 @@ } ] }, + { + "code": "31314-8", + "display": "Coxiella burnetii phase 2 IgG Ab [Presence] in Serum", + "target": [ + { + "code": "http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-interpretation-codes-pos", + "equivalence": "relatedto" + } + ] + }, + { + "code": "31315-5", + "display": "Coxiella burnetii phase 2 IgM Ab [Presence] in Serum", + "target": [ + { + "code": "http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-interpretation-codes-pos", + "equivalence": "relatedto" + } + ] + }, { "code": "31616-6", "display": "Rubella virus IgM Ab [Presence] in Serum", @@ -1515,6 +1535,16 @@ } ] }, + { + "code": "49124-1", + "display": "Coxiella burnetii identified in Specimen by Sequencing", + "target": [ + { + "code": "http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-interpretation-codes-pos", + "equivalence": "relatedto" + } + ] + }, { "code": "49521-8", "display": "Influenza virus A H1 RNA [Presence] in Specimen by NAA with probe detection", @@ -1555,16 +1585,6 @@ } ] }, - { - "code": "49614-1", - "display": "Campylobacter sp DNA [Identifier] in Specimen by NAA with probe detection", - "target": [ - { - "code": "http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-interpretation-codes-pos", - "equivalence": "relatedto" - } - ] - }, { "code": "49671-1", "display": "Neisseria meningitidis DNA [Presence] in Specimen by NAA with probe detection", @@ -1585,16 +1605,6 @@ } ] }, - { - "code": "4992-4", - "display": "Campylobacter sp rRNA [Presence] in Specimen by Probe", - "target": [ - { - "code": "http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-interpretation-codes-pos", - "equivalence": "relatedto" - } - ] - }, { "code": "5007-0", "display": "Hepatitis B virus DNA [Presence] in Blood by NAA with probe detection", @@ -1715,6 +1725,16 @@ } ] }, + { + "code": "51939-7", + "display": "Escherichia coli shiga-like toxin 2 [Presence] in Stool by Immunoassay", + "target": [ + { + "code": "http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-interpretation-codes-pos", + "equivalence": "relatedto" + } + ] + }, { "code": "51940-5", "display": "Escherichia coli shiga-like toxin 1 [Presence] in Stool by Immunoassay", @@ -1845,6 +1865,16 @@ } ] }, + { + "code": "53946-0", + "display": "Escherichia coli shiga-like toxin identified in Specimen", + "target": [ + { + "code": "http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-interpretation-codes-pos", + "equivalence": "relatedto" + } + ] + }, { "code": "54091-4", "display": "Rubella virus RNA [Presence] in Specimen by NAA with probe detection", @@ -2005,6 +2035,16 @@ } ] }, + { + "code": "60261-5", + "display": "Coxiella burnetii DNA [Presence] in Serum or Plasma by NAA with probe detection", + "target": [ + { + "code": "http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-interpretation-codes-pos", + "equivalence": "relatedto" + } + ] + }, { "code": "60274-8", "display": "Rubella virus RNA [Presence] in Serum or Plasma by NAA with probe detection", @@ -2055,16 +2095,6 @@ } ] }, - { - "code": "61368-7", - "display": "Campylobacter jejuni DNA [Presence] in Specimen by NAA with probe detection", - "target": [ - { - "code": "http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-interpretation-codes-pos", - "equivalence": "relatedto" - } - ] - }, { "code": "61369-5", "display": "Listeria monocytogenes DNA [Presence] in Specimen by NAA with probe detection", @@ -2095,36 +2125,6 @@ } ] }, - { - "code": "6329-7", - "display": "Campylobacter coli rRNA [Presence] in Specimen by Probe", - "target": [ - { - "code": "http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-interpretation-codes-pos", - "equivalence": "relatedto" - } - ] - }, - { - "code": "6333-9", - "display": "Campylobacter jejuni rRNA [Presence] in Specimen by Probe", - "target": [ - { - "code": "http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-interpretation-codes-pos", - "equivalence": "relatedto" - } - ] - }, - { - "code": "6334-7", - "display": "Campylobacter lari rRNA [Presence] in Specimen by Probe", - "target": [ - { - "code": "http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-interpretation-codes-pos", - "equivalence": "relatedto" - } - ] - }, { "code": "6349-5", "display": "Chlamydia trachomatis [Presence] in Specimen by Organism specific culture", @@ -2445,16 +2445,6 @@ } ] }, - { - "code": "71429-5", - "display": "Campylobacter sp DNA.diarrheagenic [Presence] in Stool by NAA with probe detection", - "target": [ - { - "code": "http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-interpretation-codes-pos", - "equivalence": "relatedto" - } - ] - }, { "code": "71782-7", "display": "Yellow fever virus IgM Ab [Presence] in Cerebral spinal fluid by Immunoassay", @@ -2665,6 +2655,26 @@ } ] }, + { + "code": "79386-9", + "display": "Escherichia coli Stx1 toxin stx1 gene [Presence] in Stool by NAA with probe detection", + "target": [ + { + "code": "http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-interpretation-codes-pos", + "equivalence": "relatedto" + } + ] + }, + { + "code": "79387-7", + "display": "Escherichia coli Stx2 toxin stx2 gene [Presence] in Stool by NAA with probe detection", + "target": [ + { + "code": "http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-interpretation-codes-pos", + "equivalence": "relatedto" + } + ] + }, { "code": "7964-0", "display": "Measles virus RNA [Presence] in Nose by NAA with probe detection", @@ -2945,6 +2955,26 @@ } ] }, + { + "code": "88177-1", + "display": "Coxiella burnetii DNA [Presence] in Blood by NAA with probe detection", + "target": [ + { + "code": "http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-interpretation-codes-pos", + "equivalence": "relatedto" + } + ] + }, + { + "code": "88178-9", + "display": "Coxiella burnetii DNA [Presence] in Tissue by NAA with probe detection", + "target": [ + { + "code": "http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-interpretation-codes-pos", + "equivalence": "relatedto" + } + ] + }, { "code": "88192-0", "display": "Crimean-Congo hemorrhagic fever virus RNA [Presence] in Serum by NAA with probe detection", @@ -3510,7 +3540,17 @@ "display": "Coxiella burnetii phase 2 IgG Ab [Titer] in Serum", "target": [ { - "code": "http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-interpretation-codes-titer", + "code": "http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-interpretation-codes-pos", + "equivalence": "relatedto" + } + ] + }, + { + "code": "9711-3", + "display": "Coxiella burnetii phase 2 IgM Ab [Titer] in Serum", + "target": [ + { + "code": "http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-interpretation-codes-pos", "equivalence": "relatedto" } ] diff --git a/input/resources/ConceptMap-ch-elm-results-to-observation-profile.json b/input/resources/ConceptMap-ch-elm-results-to-observation-profile.json index 6edc05a..ed73528 100644 --- a/input/resources/ConceptMap-ch-elm-results-to-observation-profile.json +++ b/input/resources/ConceptMap-ch-elm-results-to-observation-profile.json @@ -64,6 +64,16 @@ "equivalence": "relatedto" } ] + }, + { + "code": "9711-3", + "display": "Coxiella burnetii phase 2 IgM Ab [Titer] in Serum", + "target": [ + { + "code": "http://fhir.ch/ig/ch-elm/StructureDefinition/ch-elm-observation-rto", + "equivalence": "relatedto" + } + ] } ] } diff --git a/input/resources/ValueSet-ch-elm-expecting-organism-specification.json b/input/resources/ValueSet-ch-elm-expecting-organism-specification.json index e5ab295..5cb1279 100644 --- a/input/resources/ValueSet-ch-elm-expecting-organism-specification.json +++ b/input/resources/ValueSet-ch-elm-expecting-organism-specification.json @@ -85,14 +85,6 @@ "code": "49612-5", "display": "Salmonella sp DNA [Presence] in Specimen by NAA with probe detection" }, - { - "code": "49614-1", - "display": "Campylobacter sp DNA [Identifier] in Specimen by NAA with probe detection" - }, - { - "code": "4992-4", - "display": "Campylobacter sp rRNA [Presence] in Specimen by Probe" - }, { "code": "50687-3", "display": "Plasmodium sp Ag [Presence] in Blood" @@ -169,10 +161,6 @@ "code": "70569-9", "display": "Plasmodium sp Ag [Identifier] in Blood by Rapid immunoassay" }, - { - "code": "71429-5", - "display": "Campylobacter sp DNA.diarrheagenic [Presence] in Stool by NAA with probe detection" - }, { "code": "74037-3", "display": "Transmissible spongiform encephalopathy [Identifier] in Brain by Light microscopy" diff --git a/input/resources/ValueSet-ch-elm-results-laboratory-observation.json b/input/resources/ValueSet-ch-elm-results-laboratory-observation.json index 45398f2..435e404 100644 --- a/input/resources/ValueSet-ch-elm-results-laboratory-observation.json +++ b/input/resources/ValueSet-ch-elm-results-laboratory-observation.json @@ -69,18 +69,6 @@ "code": "101427-3", "display": "Shigella sp DNA [Presence] in Stool by NAA with probe detection" }, - { - "code": "101552-8", - "display": "Campylobacter coli DNA [Presence] in Stool by NAA with probe detection" - }, - { - "code": "101554-4", - "display": "Campylobacter jejuni DNA [Presence] in Stool by NAA with probe detection" - }, - { - "code": "101555-1", - "display": "Campylobacter upsaliensis DNA [Presence] in Stool by NAA with probe detection" - }, { "code": "101662-5", "display": "Abnormal Prion Protein [Presence] in Cerebral spinal fluid by RT-QuIC" @@ -153,6 +141,10 @@ "code": "11259-9", "display": "Hepatitis C virus RNA [Presence] in Serum or Plasma by NAA with probe detection" }, + { + "code": "11469-4", + "display": "Bacillus anthracis [Presence] in Specimen by Organism specific culture" + }, { "code": "13954-3", "display": "Hepatitis B virus e Ag [Presence] in Serum or Plasma by Immunoassay" @@ -217,6 +209,10 @@ "code": "21191-2", "display": "Chlamydia trachomatis DNA [Presence] in Urethra by NAA with probe detection" }, + { + "code": "21262-1", + "display": "Escherichia coli shiga-like toxin [Presence] in Stool by Immunoassay" + }, { "code": "21363-7", "display": "Legionella pneumophila DNA [Presence] in Specimen by NAA with probe detection" @@ -257,6 +253,10 @@ "code": "22867-6", "display": "Bacillus anthracis Ag [Presence] in Specimen by Immunofluorescence" }, + { + "code": "23024-3", + "display": "Coxiella burnetii DNA [Presence] in Specimen by NAA with probe detection" + }, { "code": "23126-6", "display": "Francisella tularensis Ag [Presence] in Tissue by Immune stain" @@ -321,6 +321,14 @@ "code": "31204-1", "display": "Hepatitis B virus core IgM Ab [Presence] in Serum" }, + { + "code": "31314-8", + "display": "Coxiella burnetii phase 2 IgG Ab [Presence] in Serum" + }, + { + "code": "31315-5", + "display": "Coxiella burnetii phase 2 IgM Ab [Presence] in Serum" + }, { "code": "31616-6", "display": "Rubella virus IgM Ab [Presence] in Serum" @@ -609,6 +617,10 @@ "code": "48508-6", "display": "Measles virus RNA [Presence] in Specimen by NAA with probe detection" }, + { + "code": "49124-1", + "display": "Coxiella burnetii identified in Specimen by Sequencing" + }, { "code": "49521-8", "display": "Influenza virus A H1 RNA [Presence] in Specimen by NAA with probe detection" @@ -625,10 +637,6 @@ "code": "49612-5", "display": "Salmonella sp DNA [Presence] in Specimen by NAA with probe detection" }, - { - "code": "49614-1", - "display": "Campylobacter sp DNA [Identifier] in Specimen by NAA with probe detection" - }, { "code": "49671-1", "display": "Neisseria meningitidis DNA [Presence] in Specimen by NAA with probe detection" @@ -637,10 +645,6 @@ "code": "49672-9", "display": "Streptococcus pneumoniae DNA [Presence] in Specimen by NAA with probe detection" }, - { - "code": "4992-4", - "display": "Campylobacter sp rRNA [Presence] in Specimen by Probe" - }, { "code": "5007-0", "display": "Hepatitis B virus DNA [Presence] in Blood by NAA with probe detection" @@ -689,6 +693,10 @@ "code": "51664-1", "display": "Chikungunya virus RNA [Presence] in Specimen by NAA with probe detection" }, + { + "code": "51939-7", + "display": "Escherichia coli shiga-like toxin 2 [Presence] in Stool by Immunoassay" + }, { "code": "51940-5", "display": "Escherichia coli shiga-like toxin 1 [Presence] in Stool by Immunoassay" @@ -741,6 +749,10 @@ "code": "53942-9", "display": "Vibrio cholerae toxin ctx gene [Presence] in Specimen by NAA with probe detection" }, + { + "code": "53946-0", + "display": "Escherichia coli shiga-like toxin identified in Specimen" + }, { "code": "54091-4", "display": "Rubella virus RNA [Presence] in Specimen by NAA with probe detection" @@ -805,6 +817,10 @@ "code": "60256-5", "display": "Neisseria gonorrhoeae rRNA [Presence] in Urine by NAA with probe detection" }, + { + "code": "60261-5", + "display": "Coxiella burnetii DNA [Presence] in Serum or Plasma by NAA with probe detection" + }, { "code": "60274-8", "display": "Rubella virus RNA [Presence] in Serum or Plasma by NAA with probe detection" @@ -825,10 +841,6 @@ "code": "61366-1", "display": "Haemophilus influenzae DNA [Presence] in Specimen by NAA with probe detection" }, - { - "code": "61368-7", - "display": "Campylobacter jejuni DNA [Presence] in Specimen by NAA with probe detection" - }, { "code": "61369-5", "display": "Listeria monocytogenes DNA [Presence] in Specimen by NAA with probe detection" @@ -841,18 +853,6 @@ "code": "62469-2", "display": "HIV 1 RNA [Units/volume] (viral load) in Serum or Plasma by NAA with probe detection" }, - { - "code": "6329-7", - "display": "Campylobacter coli rRNA [Presence] in Specimen by Probe" - }, - { - "code": "6333-9", - "display": "Campylobacter jejuni rRNA [Presence] in Specimen by Probe" - }, - { - "code": "6334-7", - "display": "Campylobacter lari rRNA [Presence] in Specimen by Probe" - }, { "code": "6349-5", "display": "Chlamydia trachomatis [Presence] in Specimen by Organism specific culture" @@ -981,10 +981,6 @@ "code": "70858-6", "display": "Rabies virus neutralizing antibody [Presence] in Serum by Neutralization test" }, - { - "code": "71429-5", - "display": "Campylobacter sp DNA.diarrheagenic [Presence] in Stool by NAA with probe detection" - }, { "code": "71782-7", "display": "Yellow fever virus IgM Ab [Presence] in Cerebral spinal fluid by Immunoassay" @@ -1069,6 +1065,14 @@ "code": "79190-5", "display": "Zika virus RNA [Presence] in Specimen by NAA with probe detection" }, + { + "code": "79386-9", + "display": "Escherichia coli Stx1 toxin stx1 gene [Presence] in Stool by NAA with probe detection" + }, + { + "code": "79387-7", + "display": "Escherichia coli Stx2 toxin stx2 gene [Presence] in Stool by NAA with probe detection" + }, { "code": "7964-0", "display": "Measles virus RNA [Presence] in Nose by NAA with probe detection" @@ -1181,6 +1185,14 @@ "code": "87985-8", "display": "Trichinella spiralis DNA [Presence] in Tissue by NAA with probe detection" }, + { + "code": "88177-1", + "display": "Coxiella burnetii DNA [Presence] in Blood by NAA with probe detection" + }, + { + "code": "88178-9", + "display": "Coxiella burnetii DNA [Presence] in Tissue by NAA with probe detection" + }, { "code": "88192-0", "display": "Crimean-Congo hemorrhagic fever virus RNA [Presence] in Serum by NAA with probe detection" @@ -1409,6 +1421,10 @@ "code": "9709-7", "display": "Coxiella burnetii phase 2 IgG Ab [Titer] in Serum" }, + { + "code": "9711-3", + "display": "Coxiella burnetii phase 2 IgM Ab [Titer] in Serum" + }, { "code": "97313-1", "display": "Salmonella sp DNA [Presence] in Stool by NAA with probe detection"