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README.md

GenoFLU container

Main tool: GenoFLU

Code repository: https://github.com/USDA-VS/GenoFLU

Additional tools:

  • biopython 1.85
  • ncbi-blast 2.16.0
  • numpy 2.0.2
  • pandas 2.2.3
  • python 3.9.21

Basic information on how to use this tool:

  • executable: genoflu.py
  • help: --help
  • version: --version
  • description: "GenoFLU determines the genotype of a segmented flu sample by BLASTing a multi-segment FASTA against the BLAST database"

Additional information:

Full documentation: https://github.com/USDA-VS/GenoFLU

Example Usage

genoflu.py -f input.fasta