From f364e360fe437e86f92b71a15e3c34ca45695956 Mon Sep 17 00:00:00 2001
From: Luis Moris Fernandez <luis.moris.fernandez@gmail.com>
Date: Mon, 27 Jan 2025 11:34:57 +0100
Subject: [PATCH 1/2] Revert "Merge pull request #14 from
 Boehringer-Ingelheim/include_pdf_latex"

This reverts commit aea1c66d858eb7192a2358b06bb7306fb83e8151, reversing
changes made to 7820ba09a1af7cd8397a6e812ca22b98f2d641d2.
---
 scripts/install_sys_deps.sh | 2 --
 1 file changed, 2 deletions(-)

diff --git a/scripts/install_sys_deps.sh b/scripts/install_sys_deps.sh
index 06a77e9..6db5377 100755
--- a/scripts/install_sys_deps.sh
+++ b/scripts/install_sys_deps.sh
@@ -8,9 +8,7 @@ lbzip2 \
 rsync \
 qpdf \
 wget \
-texlive-latex-base\
 "
-# texlive-latex-base because it contains `pdflatex`
 apt-get update -y
 # shellcheck disable=SC2086
 apt-get install -q -y ${pkgs_to_install}

From d1127a0ea246707a8349d7a4b79d0c401da99360 Mon Sep 17 00:00:00 2001
From: Luis Moris Fernandez <luis.moris.fernandez@gmail.com>
Date: Mon, 27 Jan 2025 15:46:43 +0100
Subject: [PATCH 2/2] link TinyTex binaries to /usr/local/bin

---
 Dockerfile | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/Dockerfile b/Dockerfile
index 192dc86..28dbbe8 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -33,7 +33,10 @@ RUN /rocker_scripts/install_R_source.sh && \
 
 COPY scripts /scripts
 RUN /scripts/install_sys_deps.sh && \
-    /scripts/install_r_pkgs.R 
+    /scripts/install_r_pkgs.R
+
+# TinyTex is installed in /root/.TinyTex and then linked to /root/bin, for it to be found we link to a location found in PATH
+RUN ln -s /root/.TinyTeX/bin/*/* /usr/local/bin/
 
 # Cleanup
 RUN rm -rf /rocker_scripts /scripts